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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 43 44 45 46 47 48 49 50 51 ... 1720 1721 » 2301-2350 / 86044 show all
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	66.4313	522	2	522	1	1	100.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	97.4729	95.2621	99.7888	69.4023	945	47	945	2	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	98.2585	96.7678	99.7959	68.4820	1467	49	1467	3	1	33.3333
hfeng-pmm3	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	26.0096	1704	0	1704	0	0
hfeng-pmm3	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	62.9630	10	0	10	0	0
hfeng-pmm3	SNP	tv	func_cds	het	99.9059	99.9624	99.8496	29.2819	2656	1	2655	4	0	0.0000
hfeng-pmm3	SNP	tv	func_cds	*	99.9428	99.9771	99.9085	28.1938	4370	1	4369	4	0	0.0000
hfeng-pmm3	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	HG002compoundhet	homalt	99.8376	99.8229	99.8524	42.5250	3382	6	3382	5	5	100.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
hfeng-pmm3	SNP	tv	HG002compoundhet	het	94.3711	89.5142	99.7852	53.0848	4183	490	4181	9	2	22.2222
hfeng-pmm3	SNP	tv	HG002compoundhet	*	97.0510	94.4189	99.8341	47.0669	8425	498	8423	14	7	50.0000
hfeng-pmm3	SNP	tv	HG002complexvar	homalt	99.9769	99.9643	99.9895	22.8756	95077	34	95069	10	9	90.0000
hfeng-pmm3	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	37.5254	308	2	308	0	0
hfeng-pmm3	SNP	tv	HG002complexvar	het	99.7826	99.5854	99.9807	20.9857	150106	625	150027	29	6	20.6897
hfeng-pmm3	SNP	tv	HG002complexvar	*	99.8576	99.7315	99.9841	21.7544	245491	661	245404	39	15	38.4615
hfeng-pmm3	SNP	tv	*	homalt	99.9887	99.9854	99.9920	20.6594	377068	55	377060	30	18	60.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	*	het	99.9161	99.8738	99.9586	21.3235	590949	747	590875	245	12	4.8980
hfeng-pmm3	SNP	tv	*	*	99.9443	99.9171	99.9715	21.1004	968886	804	968804	276	31	11.2319
hfeng-pmm2	SNP	tv	tech_badpromoters	homalt	98.7342	100.0000	97.5000	54.5455	39	0	39	1	1	100.0000
hfeng-pmm2	SNP	tv	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	SNP	tv	tech_badpromoters	het	98.4615	96.9697	100.0000	42.8571	32	1	32	0	0
hfeng-pmm2	SNP	tv	tech_badpromoters	*	98.6111	98.6111	98.6111	50.0000	71	1	71	1	1	100.0000
hfeng-pmm2	SNP	tv	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	SNP	tv	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	SNP	tv	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	SNP	tv	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
hfeng-pmm2	SNP	tv	segdup	homalt	99.8919	99.9074	99.8765	90.2428	3235	3	3235	4	4	100.0000
hfeng-pmm2	SNP	tv	segdup	hetalt	100.0000	100.0000	100.0000	97.5862	7	0	7	0	0
hfeng-pmm2	SNP	tv	segdup	het	99.5467	99.7541	99.3402	91.9297	5274	13	5270	35	0	0.0000
hfeng-pmm2	SNP	tv	segdup	*	99.6780	99.8125	99.5439	91.3819	8516	16	8512	39	4	10.2564
hfeng-pmm2	SNP	tv	map_siren	homalt	99.9014	99.9014	99.9014	56.1199	17223	17	17220	17	9	52.9412
hfeng-pmm2	SNP	tv	map_siren	hetalt	99.3789	98.7654	100.0000	75.3846	80	1	80	0	0
hfeng-pmm2	SNP	tv	map_siren	het	99.5196	99.5806	99.4588	60.5491	28489	120	28484	155	14	9.0323
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721
hfeng-pmm2	SNP	tv	map_l250_m2_e1	homalt	99.4201	99.6829	99.1588	88.2127	943	3	943	8	4	50.0000
hfeng-pmm2	SNP	tv	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	92.9577	5	0	5	0	0
hfeng-pmm2	SNP	tv	map_l250_m2_e1	het	97.7868	97.8117	97.7620	90.3675	1922	43	1922	44	3	6.8182
hfeng-pmm2	SNP	tv	map_l250_m2_e1	*	98.3213	98.4225	98.2204	89.7650	2870	46	2870	52	7	13.4615
hfeng-pmm2	SNP	tv	map_l250_m2_e0	homalt	99.4146	99.6798	99.1507	88.1241	934	3	934	8	4	50.0000
hfeng-pmm2	SNP	tv	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	92.9577	5	0	5	0	0

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