PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1151-1200 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | HG002compoundhet | het | 99.1949 | 98.9300 | 99.4612 | 50.0484 | 4623 | 50 | 4615 | 25 | 5 | 20.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002compoundhet | * | 99.3414 | 98.9802 | 99.7052 | 44.7928 | 8832 | 91 | 8795 | 26 | 6 | 23.0769 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | homalt | 99.9174 | 99.8549 | 99.9800 | 22.4289 | 94973 | 138 | 95001 | 19 | 19 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | het | 99.8062 | 99.7174 | 99.8951 | 21.1944 | 150308 | 426 | 150523 | 158 | 48 | 30.3797 | |
| ltrigg-rtg2 | SNP | tv | HG002complexvar | * | 99.8482 | 99.7705 | 99.9260 | 21.7021 | 245590 | 565 | 245834 | 182 | 72 | 39.5604 | |
| ltrigg-rtg2 | SNP | tv | * | homalt | 99.9678 | 99.9486 | 99.9870 | 19.3650 | 376927 | 194 | 376951 | 49 | 41 | 83.6735 | |
| ltrigg-rtg2 | SNP | tv | * | hetalt | 99.2565 | 99.5408 | 98.9738 | 40.5020 | 867 | 4 | 868 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | * | het | 99.7405 | 99.8410 | 99.6402 | 19.4900 | 590763 | 941 | 590991 | 2134 | 60 | 2.8116 | |
| ltrigg-rtg2 | SNP | tv | * | * | 99.8284 | 99.8825 | 99.7743 | 19.4672 | 968557 | 1139 | 968810 | 2192 | 110 | 5.0183 | |
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 54.7619 | 38 | 1 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | het | 92.9577 | 100.0000 | 86.8421 | 59.1398 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | * | 95.9459 | 98.6111 | 93.4211 | 57.0621 | 71 | 1 | 71 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.9204 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9027 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | segdup | het | 98.5379 | 99.3380 | 97.7505 | 88.6829 | 5252 | 35 | 5258 | 121 | 1 | 0.8264 | |
| ltrigg-rtg1 | SNP | tv | segdup | * | 98.9694 | 99.5663 | 98.3796 | 89.2053 | 8495 | 37 | 8500 | 140 | 20 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_siren | homalt | 99.8926 | 99.8318 | 99.9535 | 54.5447 | 17211 | 29 | 17205 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | het | 99.1688 | 98.8255 | 99.5144 | 50.4058 | 28273 | 336 | 28278 | 138 | 6 | 4.3478 | |
| ltrigg-rtg1 | SNP | tv | map_siren | * | 99.4402 | 99.2053 | 99.6762 | 52.0914 | 45565 | 365 | 45564 | 148 | 13 | 8.7838 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | homalt | 99.6822 | 99.4715 | 99.8938 | 87.1662 | 941 | 5 | 941 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | het | 96.5098 | 93.5878 | 99.6202 | 78.7624 | 1839 | 126 | 1836 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | * | 97.5651 | 95.5075 | 99.7133 | 82.6147 | 2785 | 131 | 2782 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | homalt | 99.6791 | 99.4664 | 99.8928 | 87.0650 | 932 | 5 | 932 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | het | 96.4634 | 93.5052 | 99.6150 | 78.6168 | 1814 | 126 | 1811 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | * | 97.5357 | 95.4545 | 99.7097 | 82.4960 | 2751 | 131 | 2748 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | homalt | 99.6487 | 99.4159 | 99.8826 | 86.0259 | 851 | 5 | 851 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | het | 96.2660 | 93.0610 | 99.6997 | 76.8718 | 1663 | 124 | 1660 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | * | 97.3892 | 95.1266 | 99.7620 | 81.0778 | 2518 | 129 | 2515 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m0_e0 | homalt | 99.4792 | 98.9637 | 100.0000 | 92.6482 | 191 | 2 | 191 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | map_l250_m0_e0 | het | 93.8017 | 88.6364 | 99.6063 | 81.4936 | 507 | 65 | 506 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m0_e0 | * | 95.2899 | 91.2418 | 99.7139 | 86.9370 | 698 | 67 | 697 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | homalt | 99.8426 | 99.7339 | 99.9516 | 72.6103 | 4123 | 11 | 4127 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0145 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | het | 98.3805 | 97.1421 | 99.6509 | 65.0308 | 7138 | 210 | 7136 | 25 | 4 | 16.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | * | 98.9128 | 98.0786 | 99.7613 | 68.2500 | 11281 | 221 | 11283 | 27 | 6 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | homalt | 99.8529 | 99.7551 | 99.9509 | 72.6094 | 4073 | 10 | 4074 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | het | 98.3588 | 97.1042 | 99.6461 | 64.9467 | 7042 | 210 | 7040 | 25 | 4 | 16.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | * | 98.9030 | 98.0625 | 99.7581 | 68.2059 | 11135 | 220 | 11134 | 27 | 6 | 22.2222 | |