PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85601-85650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5294 | 13.9276 | 75.7576 | 73.7052 | 50 | 309 | 50 | 16 | 14 | 87.5000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3238 | 96.5464 | 96.1023 | 63.4311 | 27284 | 976 | 27270 | 1106 | 763 | 68.9873 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.3667 | 99.3548 | 95.4567 | 60.8139 | 16323 | 106 | 16325 | 777 | 514 | 66.1519 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 1.8692 | 0.0000 | 0.0000 | 10 | 525 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0138 | 96.9458 | 97.0818 | 54.6044 | 10951 | 345 | 10945 | 329 | 249 | 75.6839 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.4170 | 67.7419 | 69.1057 | 99.9232 | 84 | 40 | 85 | 38 | 22 | 57.8947 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.3404 | 78.1609 | 67.3267 | 99.9209 | 68 | 19 | 68 | 33 | 18 | 54.5455 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 76.7278 | 76.1905 | 77.2727 | 99.9025 | 16 | 5 | 17 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.9195 | 72.9786 | 74.8850 | 67.4004 | 14495 | 5367 | 14485 | 4858 | 4633 | 95.3685 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.5434 | 97.2452 | 70.2073 | 58.5180 | 10802 | 306 | 10840 | 4600 | 4440 | 96.5217 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.6033 | 0.0000 | 0.0000 | 43 | 2639 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.1437 | 60.1120 | 93.3897 | 54.7163 | 3650 | 2422 | 3645 | 258 | 193 | 74.8062 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 33.8478 | 32.4294 | 35.3960 | 74.1660 | 861 | 1794 | 858 | 1566 | 1515 | 96.7433 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.8073 | 85.3306 | 35.1672 | 63.7131 | 826 | 142 | 831 | 1532 | 1487 | 97.0627 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.5858 | 0.0000 | 0.0000 | 7 | 1188 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 10.0854 | 5.6911 | 44.2623 | 90.6728 | 28 | 464 | 27 | 34 | 28 | 82.3529 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 74.6805 | 73.6967 | 75.6909 | 58.8837 | 4962 | 1771 | 4957 | 1592 | 1522 | 95.6030 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.8190 | 98.1137 | 70.1659 | 50.3295 | 3589 | 69 | 3596 | 1529 | 1471 | 96.2067 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.0834 | 0.0000 | 0.0000 | 10 | 913 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.1858 | 63.3364 | 95.5758 | 45.0405 | 1363 | 789 | 1361 | 63 | 51 | 80.9524 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.6875 | 19.8198 | 21.6346 | 68.9552 | 44 | 178 | 45 | 163 | 158 | 96.9325 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 32.5074 | 80.0000 | 20.3980 | 59.7194 | 40 | 10 | 41 | 160 | 156 | 97.5000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 125 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | * | 90.4000 | 93.9859 | 87.0777 | 93.2660 | 1469 | 94 | 1469 | 218 | 66 | 30.2752 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | het | 89.7886 | 97.7473 | 83.0283 | 91.0144 | 998 | 23 | 998 | 204 | 61 | 29.9020 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 33 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 94.7686 | 92.5344 | 97.1134 | 82.2993 | 471 | 38 | 471 | 14 | 5 | 35.7143 | |
| ghariani-varprowl | INDEL | * | map_l100_m1_e0 | * | 90.4036 | 92.6380 | 88.2744 | 91.8947 | 3322 | 264 | 3320 | 441 | 203 | 46.0317 | |
| ghariani-varprowl | INDEL | * | map_l100_m1_e0 | het | 90.5454 | 98.1655 | 84.0230 | 89.3321 | 2194 | 41 | 2193 | 417 | 195 | 46.7626 | |
| ghariani-varprowl | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 0.8065 | 0.0000 | 0.0000 | 1 | 123 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l100_m1_e0 | homalt | 94.7855 | 91.8500 | 97.9149 | 78.8807 | 1127 | 100 | 1127 | 24 | 8 | 33.3333 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | * | 90.4686 | 92.6889 | 88.3523 | 92.4226 | 3423 | 270 | 3421 | 451 | 206 | 45.6763 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | het | 90.5891 | 98.0928 | 84.1518 | 89.9495 | 2263 | 44 | 2262 | 426 | 198 | 46.4789 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.8000 | 0.0000 | 0.0000 | 1 | 124 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | homalt | 94.8057 | 91.9112 | 97.8885 | 80.1409 | 1159 | 102 | 1159 | 25 | 8 | 32.0000 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | * | 90.3178 | 92.5453 | 88.1950 | 92.4782 | 3476 | 280 | 3474 | 465 | 216 | 46.4516 | |