PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85201-85250 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | homalt | 92.6495 | 86.3745 | 99.9076 | 72.5432 | 9737 | 1536 | 9728 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | * | 92.7527 | 90.2330 | 95.4173 | 85.0649 | 28741 | 3111 | 28754 | 1381 | 761 | 55.1050 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | het | 92.7026 | 92.2615 | 93.1480 | 87.6370 | 18575 | 1558 | 18597 | 1368 | 748 | 54.6784 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2062 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | homalt | 92.8770 | 86.7681 | 99.9113 | 74.6788 | 10151 | 1548 | 10142 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | * | 92.7947 | 90.2887 | 95.4437 | 85.1006 | 29082 | 3128 | 29096 | 1389 | 765 | 55.0756 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | het | 92.7489 | 92.3145 | 93.1874 | 87.6725 | 18798 | 1565 | 18822 | 1376 | 752 | 54.6512 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2564 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | homalt | 92.9111 | 86.8268 | 99.9123 | 74.6875 | 10269 | 1558 | 10259 | 9 | 9 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | * | 83.7909 | 76.0187 | 93.3333 | 96.5523 | 1623 | 512 | 1624 | 116 | 43 | 37.0690 | |
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | het | 82.6147 | 75.6972 | 90.9236 | 97.0301 | 1140 | 366 | 1142 | 114 | 41 | 35.9649 | |
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | map_l250_m0_e0 | homalt | 86.7142 | 76.7886 | 99.5868 | 94.0431 | 483 | 146 | 482 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | * | 87.2444 | 81.6810 | 93.6211 | 93.6506 | 5899 | 1323 | 5900 | 402 | 193 | 48.0100 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | het | 87.0994 | 83.6172 | 90.8842 | 94.6651 | 3976 | 779 | 3978 | 399 | 190 | 47.6190 | |
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l250_m1_e0 | homalt | 87.5513 | 77.9537 | 99.8439 | 88.7661 | 1920 | 543 | 1919 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | * | 87.8865 | 82.6252 | 93.8634 | 93.9104 | 6515 | 1370 | 6516 | 426 | 206 | 48.3568 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | het | 87.7154 | 84.4628 | 91.2284 | 94.8727 | 4387 | 807 | 4389 | 422 | 202 | 47.8673 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e0 | homalt | 88.2609 | 79.0767 | 99.8589 | 89.3960 | 2124 | 562 | 2123 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | * | 87.9173 | 82.6718 | 93.8735 | 93.9495 | 6603 | 1384 | 6604 | 431 | 208 | 48.2599 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | het | 87.7421 | 84.4985 | 91.2446 | 94.9087 | 4448 | 816 | 4450 | 427 | 204 | 47.7752 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 95.7265 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l250_m2_e1 | homalt | 88.3005 | 79.1391 | 99.8607 | 89.4279 | 2151 | 567 | 2150 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_siren | * | 96.8913 | 95.7977 | 98.0103 | 67.7918 | 140083 | 6145 | 140139 | 2845 | 1340 | 47.1002 | |
| gduggal-snapplat | SNP | * | map_siren | het | 96.5899 | 96.2777 | 96.9043 | 72.4626 | 87604 | 3387 | 87710 | 2802 | 1309 | 46.7166 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_siren | homalt | 97.4154 | 95.0214 | 99.9332 | 54.3867 | 52410 | 2746 | 52361 | 35 | 23 | 65.7143 | |
| gduggal-snapplat | SNP | * | segdup | * | 98.9750 | 98.7209 | 99.2304 | 93.4858 | 27708 | 359 | 27723 | 215 | 30 | 13.9535 | |
| gduggal-snapplat | SNP | * | segdup | het | 98.6817 | 98.5044 | 98.8598 | 94.8279 | 17058 | 259 | 17080 | 197 | 17 | 8.6294 | |
| gduggal-snapplat | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8125 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | segdup | homalt | 99.4486 | 99.0692 | 99.8310 | 88.7280 | 10643 | 100 | 10636 | 18 | 13 | 72.2222 | |
| gduggal-snapplat | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | tech_badpromoters | * | 91.8033 | 89.1720 | 94.5946 | 70.5179 | 140 | 17 | 140 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | het | 91.0256 | 92.2078 | 89.8734 | 77.4286 | 71 | 6 | 71 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 54.6053 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | * | * | 99.0030 | 98.6815 | 99.3266 | 26.8746 | 3014360 | 40274 | 3015151 | 20442 | 2819 | 13.7902 | |
| gduggal-snapplat | SNP | * | * | het | 98.7739 | 98.5851 | 98.9633 | 30.9812 | 1847092 | 26509 | 1848114 | 19360 | 2442 | 12.6136 | |
| gduggal-snapplat | SNP | * | * | hetalt | 96.2665 | 94.8335 | 97.7435 | 52.4025 | 826 | 45 | 823 | 19 | 18 | 94.7368 | |
| gduggal-snapplat | SNP | * | * | homalt | 99.3703 | 98.8374 | 99.9089 | 19.1469 | 1166442 | 13720 | 1166214 | 1063 | 359 | 33.7723 | |
| gduggal-snapplat | SNP | * | HG002complexvar | * | 97.9967 | 97.4708 | 98.5284 | 22.9400 | 735305 | 19080 | 736073 | 10994 | 1866 | 16.9729 | |
| gduggal-snapplat | SNP | * | HG002complexvar | het | 97.4346 | 97.1046 | 97.7668 | 23.9217 | 452022 | 13478 | 453020 | 10348 | 1516 | 14.6502 | |
| gduggal-snapplat | SNP | * | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | * | HG002complexvar | homalt | 98.9173 | 98.0729 | 99.7763 | 21.2516 | 283014 | 5561 | 282787 | 634 | 338 | 53.3123 | |