PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85151-85200 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9496 | 78.1237 | 98.0235 | 54.2271 | 5746 | 1609 | 5753 | 116 | 13 | 11.2069 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.1010 | 77.3614 | 97.0668 | 59.1479 | 3571 | 1045 | 3574 | 108 | 9 | 8.3333 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.3969 | 79.4375 | 99.6342 | 42.5683 | 2175 | 563 | 2179 | 8 | 4 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.0526 | 44.4444 | 13.7931 | 96.4198 | 4 | 5 | 4 | 25 | 1 | 4.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 12.1212 | 28.5714 | 7.6923 | 96.3121 | 2 | 5 | 2 | 24 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | * | 93.1162 | 90.6854 | 95.6808 | 80.1096 | 29782 | 3059 | 29795 | 1345 | 754 | 56.0595 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | het | 93.0063 | 92.3697 | 93.6518 | 83.5542 | 19587 | 1618 | 19606 | 1329 | 738 | 55.5305 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | homalt | 93.3571 | 87.6248 | 99.8920 | 65.0376 | 10182 | 1438 | 10176 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | * | 95.4122 | 93.9174 | 96.9553 | 75.8528 | 67999 | 4404 | 68019 | 2136 | 1080 | 50.5618 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | het | 95.1709 | 95.0043 | 95.3380 | 79.9679 | 43093 | 2266 | 43129 | 2109 | 1058 | 50.1660 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | homalt | 95.8529 | 92.1009 | 99.9236 | 61.4019 | 24870 | 2133 | 24854 | 19 | 14 | 73.6842 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | * | 95.4808 | 94.0120 | 96.9962 | 77.3300 | 69535 | 4429 | 69555 | 2154 | 1085 | 50.3714 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | het | 95.2448 | 95.0839 | 95.4062 | 81.1675 | 44118 | 2281 | 44154 | 2126 | 1062 | 49.9530 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | homalt | 95.9129 | 92.2138 | 99.9212 | 63.8760 | 25380 | 2143 | 25364 | 20 | 15 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | * | 95.5097 | 94.0511 | 97.0142 | 77.3448 | 70291 | 4446 | 70312 | 2164 | 1091 | 50.4159 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | het | 95.2787 | 95.1235 | 95.4344 | 81.1824 | 44611 | 2287 | 44649 | 2136 | 1068 | 50.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | homalt | 95.9332 | 92.2507 | 99.9220 | 63.8706 | 25642 | 2154 | 25625 | 20 | 15 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | * | 91.0834 | 87.8360 | 94.5802 | 84.8287 | 17027 | 2358 | 17032 | 976 | 546 | 55.9426 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | het | 91.0262 | 89.8926 | 92.1888 | 87.3834 | 11384 | 1280 | 11389 | 965 | 535 | 55.4404 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | homalt | 91.2357 | 83.9839 | 99.8583 | 72.7044 | 5637 | 1075 | 5637 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | * | 93.8560 | 91.8106 | 95.9947 | 80.5503 | 41615 | 3712 | 41630 | 1737 | 931 | 53.5982 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | het | 93.6975 | 93.4770 | 93.9190 | 83.9811 | 26540 | 1852 | 26565 | 1720 | 915 | 53.1977 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | homalt | 94.1655 | 89.0269 | 99.9336 | 67.4179 | 15050 | 1855 | 15040 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | * | 93.9886 | 91.9975 | 96.0678 | 81.8481 | 42984 | 3739 | 42999 | 1760 | 941 | 53.4659 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | het | 93.8347 | 93.6353 | 94.0349 | 85.0059 | 27452 | 1866 | 27477 | 1743 | 925 | 53.0694 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7220 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | homalt | 94.2904 | 89.2489 | 99.9355 | 69.8671 | 15507 | 1868 | 15497 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | * | 94.0312 | 92.0554 | 96.0937 | 81.8790 | 43452 | 3750 | 43468 | 1767 | 944 | 53.4239 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | het | 93.8837 | 93.6910 | 94.0772 | 85.0315 | 27770 | 1870 | 27797 | 1750 | 928 | 53.0286 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | homalt | 94.3221 | 89.3053 | 99.9361 | 69.8871 | 15657 | 1875 | 15646 | 10 | 9 | 90.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | * | 89.5961 | 85.5219 | 94.0779 | 88.4577 | 10290 | 1742 | 10294 | 648 | 357 | 55.0926 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | het | 89.5077 | 87.5441 | 91.5613 | 90.3664 | 6951 | 989 | 6955 | 641 | 350 | 54.6022 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | hetalt | 75.0000 | 100.0000 | 60.0000 | 94.1860 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | homalt | 89.7981 | 81.5847 | 99.8503 | 78.9397 | 3336 | 753 | 3336 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | * | 92.5221 | 89.9049 | 95.2961 | 83.9996 | 27519 | 3090 | 27532 | 1359 | 751 | 55.2612 | |
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | het | 92.4706 | 91.9807 | 92.9658 | 86.7974 | 17767 | 1549 | 17789 | 1346 | 738 | 54.8291 | |