PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85051-85100 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | homalt | 99.1110 | 98.5626 | 99.6655 | 70.0625 | 17280 | 252 | 17280 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | SNP | * | map_l150_m0_e0 | * | 96.3674 | 97.6729 | 95.0963 | 84.3053 | 11752 | 280 | 11752 | 606 | 137 | 22.6073 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | het | 84.8243 | 94.1101 | 77.2064 | 88.4817 | 2205 | 138 | 3123 | 922 | 425 | 46.0954 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 45 | 87 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | homalt | 91.1844 | 84.8556 | 98.5333 | 76.7370 | 1087 | 194 | 1478 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | * | 84.1360 | 92.1769 | 77.3854 | 90.1890 | 813 | 69 | 1249 | 365 | 97 | 26.5753 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | het | 81.4896 | 95.5707 | 71.0250 | 91.1456 | 561 | 26 | 880 | 359 | 93 | 25.9053 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | homalt | 92.1348 | 86.6197 | 98.4000 | 84.7437 | 246 | 38 | 369 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | * | 85.8371 | 91.9791 | 80.4640 | 88.3383 | 1938 | 169 | 2636 | 640 | 251 | 39.2188 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | het | 83.6174 | 95.9551 | 74.0909 | 89.7946 | 1281 | 54 | 1793 | 627 | 240 | 38.2775 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 20 | 20 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | homalt | 92.3976 | 87.0219 | 98.4813 | 80.4522 | 637 | 95 | 843 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | * | 85.9487 | 92.0310 | 80.6206 | 88.8530 | 2021 | 175 | 2754 | 662 | 269 | 40.6344 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | het | 83.7572 | 96.0460 | 74.2562 | 90.2596 | 1336 | 55 | 1872 | 649 | 258 | 39.7535 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 21 | 21 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | homalt | 92.4285 | 87.0249 | 98.5475 | 81.2093 | 664 | 99 | 882 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | * | 85.9747 | 92.0000 | 80.6901 | 88.9628 | 2047 | 178 | 2783 | 666 | 270 | 40.5405 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | het | 83.7912 | 96.0938 | 74.2812 | 90.3789 | 1353 | 55 | 1886 | 653 | 259 | 39.6631 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 48.8372 | 0.0000 | 0.0000 | 21 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | homalt | 92.3972 | 86.9509 | 98.5714 | 81.2719 | 673 | 101 | 897 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | * | 82.1730 | 92.2179 | 74.1015 | 92.7012 | 474 | 40 | 701 | 245 | 50 | 20.4082 | |
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | het | 78.9308 | 95.6012 | 67.2109 | 93.3460 | 326 | 15 | 494 | 241 | 48 | 19.9170 | |
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m0_e0 | homalt | 92.3286 | 87.1951 | 98.1043 | 88.9817 | 143 | 21 | 207 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | * | 84.8673 | 92.3767 | 78.4870 | 90.4884 | 1236 | 102 | 1660 | 455 | 138 | 30.3297 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | het | 82.1183 | 96.2573 | 71.6010 | 91.6254 | 823 | 32 | 1127 | 447 | 132 | 29.5302 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 52.3810 | 0.0000 | 0.0000 | 11 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | homalt | 92.4102 | 87.0130 | 98.5213 | 84.2778 | 402 | 60 | 533 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | * | 85.1445 | 92.4716 | 78.8934 | 90.8735 | 1302 | 106 | 1768 | 473 | 151 | 31.9239 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | het | 82.4377 | 96.1369 | 72.1557 | 91.9661 | 871 | 35 | 1205 | 465 | 145 | 31.1828 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 52.3810 | 0.0000 | 0.0000 | 11 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | homalt | 92.6163 | 87.3181 | 98.5989 | 84.8461 | 420 | 61 | 563 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | * | 85.0852 | 92.2863 | 78.9265 | 90.9345 | 1328 | 111 | 1794 | 479 | 153 | 31.9415 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | het | 82.4518 | 96.1039 | 72.1960 | 92.0188 | 888 | 36 | 1223 | 471 | 147 | 31.2102 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 52.1739 | 0.0000 | 0.0000 | 12 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | homalt | 92.4410 | 86.9919 | 98.6183 | 84.9532 | 428 | 64 | 571 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | * | 73.1479 | 91.0256 | 61.1399 | 97.2779 | 71 | 7 | 118 | 75 | 15 | 20.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | het | 67.2352 | 94.3396 | 52.2293 | 97.4169 | 50 | 3 | 82 | 75 | 15 | 20.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | homalt | 91.3043 | 84.0000 | 100.0000 | 96.4427 | 21 | 4 | 36 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | * | 77.4944 | 91.1475 | 67.3986 | 95.4162 | 278 | 27 | 399 | 193 | 44 | 22.7979 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | het | 72.3286 | 94.2105 | 58.6957 | 95.8488 | 179 | 11 | 270 | 190 | 42 | 22.1053 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | homalt | 92.6495 | 88.0734 | 97.7273 | 92.8026 | 96 | 13 | 129 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | * | 77.7005 | 91.2387 | 67.6609 | 95.5856 | 302 | 29 | 431 | 206 | 49 | 23.7864 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | het | 72.7145 | 94.7619 | 58.9899 | 96.0065 | 199 | 11 | 292 | 203 | 47 | 23.1527 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 3 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | homalt | 92.0987 | 86.9565 | 97.8873 | 93.0221 | 100 | 15 | 139 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e1 | * | 77.7498 | 91.2913 | 67.7067 | 95.6730 | 304 | 29 | 434 | 207 | 49 | 23.6715 | |