PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84751-84800 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m2_e0 | homalt | 99.4794 | 99.5905 | 99.3685 | 87.8799 | 2675 | 11 | 2675 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | * | 98.8775 | 98.7104 | 99.0452 | 88.5497 | 7884 | 103 | 7884 | 76 | 17 | 22.3684 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | het | 98.5612 | 98.2523 | 98.8721 | 88.8393 | 5172 | 92 | 5172 | 59 | 11 | 18.6441 | |
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.0556 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_l250_m2_e1 | homalt | 99.4855 | 99.5953 | 99.3759 | 87.9341 | 2707 | 11 | 2707 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | SNP | * | map_siren | * | 99.7072 | 99.5541 | 99.8607 | 53.5315 | 145576 | 652 | 145556 | 203 | 64 | 31.5271 | |
| hfeng-pmm1 | SNP | * | map_siren | het | 99.5907 | 99.3571 | 99.8255 | 53.5727 | 90406 | 585 | 90392 | 158 | 38 | 24.0506 | |
| hfeng-pmm1 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_siren | homalt | 99.8994 | 99.8803 | 99.9184 | 53.4037 | 55090 | 66 | 55084 | 45 | 26 | 57.7778 | |
| hfeng-pmm1 | SNP | * | segdup | * | 99.7400 | 99.7934 | 99.6867 | 89.3409 | 28009 | 58 | 28003 | 88 | 11 | 12.5000 | |
| hfeng-pmm1 | SNP | * | segdup | het | 99.6248 | 99.6939 | 99.5558 | 89.5848 | 17264 | 53 | 17258 | 77 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | segdup | homalt | 99.9256 | 99.9535 | 99.8977 | 88.8973 | 10738 | 5 | 10738 | 11 | 11 | 100.0000 | |
| hfeng-pmm1 | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | tech_badpromoters | * | 99.3590 | 98.7261 | 100.0000 | 46.3668 | 155 | 2 | 155 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 42.7481 | 75 | 2 | 75 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 49.3671 | 80 | 0 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | * | * | 99.9496 | 99.9227 | 99.9766 | 18.0950 | 3052257 | 2362 | 3052118 | 715 | 107 | 14.9650 | |
| hfeng-pmm1 | SNP | * | * | het | 99.9238 | 99.8812 | 99.9665 | 18.1036 | 1871361 | 2226 | 1871236 | 628 | 48 | 7.6433 | |
| hfeng-pmm1 | SNP | * | * | hetalt | 99.7131 | 99.7704 | 99.6560 | 48.7962 | 869 | 2 | 869 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | * | * | homalt | 99.9908 | 99.9886 | 99.9929 | 18.0449 | 1180027 | 134 | 1180013 | 84 | 56 | 66.6667 | |
| hfeng-pmm1 | SNP | * | HG002complexvar | * | 99.8780 | 99.7704 | 99.9859 | 18.8078 | 752649 | 1732 | 752504 | 106 | 51 | 48.1132 | |
| hfeng-pmm1 | SNP | * | HG002complexvar | het | 99.8138 | 99.6436 | 99.9845 | 18.0286 | 463838 | 1659 | 463708 | 72 | 19 | 26.3889 | |
| hfeng-pmm1 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.1304 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | HG002complexvar | homalt | 99.9818 | 99.9754 | 99.9882 | 20.0017 | 288503 | 71 | 288488 | 34 | 32 | 94.1176 | |
| hfeng-pmm1 | SNP | * | HG002compoundhet | * | 97.8294 | 95.8214 | 99.9233 | 39.2517 | 24743 | 1079 | 24742 | 19 | 15 | 78.9474 | |
| hfeng-pmm2 | INDEL | * | * | * | 99.3119 | 99.0152 | 99.6103 | 57.8578 | 341149 | 3393 | 341015 | 1334 | 1012 | 75.8621 | |
| hfeng-pmm2 | INDEL | * | * | het | 99.3911 | 99.1521 | 99.6313 | 58.9414 | 192487 | 1646 | 192126 | 711 | 412 | 57.9466 | |
| hfeng-pmm2 | INDEL | * | * | hetalt | 96.9055 | 94.0484 | 99.9416 | 58.8044 | 23735 | 1502 | 23954 | 14 | 12 | 85.7143 | |
| hfeng-pmm2 | INDEL | * | * | homalt | 99.6594 | 99.8043 | 99.5149 | 55.8756 | 124927 | 245 | 124935 | 609 | 588 | 96.5517 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | * | 99.1003 | 98.4520 | 99.7572 | 57.3339 | 75747 | 1191 | 75614 | 184 | 143 | 77.7174 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | het | 98.8368 | 97.8772 | 99.8154 | 56.6580 | 45231 | 981 | 44870 | 83 | 50 | 60.2410 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | hetalt | 97.5479 | 95.4312 | 99.7606 | 69.1784 | 3530 | 169 | 3750 | 9 | 7 | 77.7778 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | homalt | 99.7542 | 99.8483 | 99.6603 | 56.1296 | 26986 | 41 | 26994 | 92 | 86 | 93.4783 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | * | 94.6829 | 92.5968 | 96.8651 | 60.5702 | 27742 | 2218 | 27624 | 894 | 877 | 98.0984 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | het | 86.3875 | 82.5598 | 90.5872 | 78.6150 | 3380 | 714 | 3147 | 327 | 317 | 96.9419 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | hetalt | 96.9221 | 94.0429 | 99.9832 | 52.1234 | 23680 | 1500 | 23795 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | homalt | 70.6370 | 99.4169 | 54.7791 | 80.4614 | 682 | 4 | 682 | 563 | 558 | 99.1119 | |
| hfeng-pmm2 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9312 | 10 | 0 | 10 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9394 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8400 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | func_cds | * | 99.4386 | 99.3258 | 99.5516 | 44.3196 | 442 | 3 | 444 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | func_cds | het | 99.0697 | 99.0654 | 99.0741 | 49.1765 | 212 | 2 | 214 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||