PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
551-600 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.1549 | 98.4124 | 93.9987 | 87.3444 | 8988 | 145 | 9022 | 576 | 32 | 5.5556 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.2810 | 98.6274 | 95.9709 | 85.0094 | 14371 | 200 | 14363 | 603 | 45 | 7.4627 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7317 | 99.7821 | 99.6812 | 62.4851 | 10075 | 22 | 10007 | 32 | 21 | 65.6250 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5348 | 99.3169 | 97.7649 | 70.3556 | 17448 | 120 | 17496 | 400 | 17 | 4.2500 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9643 | 99.4833 | 98.4507 | 67.9503 | 27535 | 143 | 27515 | 433 | 39 | 9.0069 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3290 | 99.4275 | 99.2308 | 69.0660 | 521 | 3 | 516 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.6640 | 97.7823 | 93.6355 | 79.8288 | 970 | 22 | 971 | 66 | 9 | 13.6364 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.9066 | 98.3509 | 95.5042 | 77.2302 | 1491 | 25 | 1487 | 70 | 13 | 18.5714 | |
| qzeng-custom | SNP | tv | func_cds | homalt | 99.8531 | 99.7066 | 100.0000 | 25.3758 | 1699 | 5 | 1688 | 0 | 0 | ||
| qzeng-custom | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| qzeng-custom | SNP | tv | func_cds | het | 99.5488 | 99.6613 | 99.4365 | 40.8444 | 2648 | 9 | 2647 | 15 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | func_cds | * | 99.6678 | 99.6797 | 99.6560 | 35.7311 | 4357 | 14 | 4345 | 15 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9938 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | SNP | tv | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9990 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | SNP | tv | HG002compoundhet | homalt | 98.8473 | 99.1145 | 98.5816 | 49.2075 | 3358 | 30 | 2780 | 40 | 35 | 87.5000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | het | 97.5388 | 97.4321 | 97.6458 | 58.3399 | 4553 | 120 | 5641 | 136 | 28 | 20.5882 | |
| qzeng-custom | SNP | tv | HG002compoundhet | * | 98.0856 | 98.0500 | 98.1212 | 53.9878 | 8749 | 174 | 9244 | 177 | 64 | 36.1582 | |
| qzeng-custom | SNP | tv | HG002complexvar | homalt | 99.2146 | 98.6185 | 99.8179 | 23.3623 | 93797 | 1314 | 91543 | 167 | 141 | 84.4311 | |
| qzeng-custom | SNP | tv | HG002complexvar | hetalt | 97.3511 | 95.1613 | 99.6441 | 38.9130 | 295 | 15 | 280 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002complexvar | het | 99.0228 | 98.2997 | 99.7567 | 23.1864 | 148171 | 2563 | 146790 | 358 | 101 | 28.2123 | |
| qzeng-custom | SNP | tv | HG002complexvar | * | 99.0948 | 98.4189 | 99.7800 | 23.2771 | 242263 | 3892 | 238613 | 526 | 243 | 46.1977 | |
| qzeng-custom | SNP | tv | * | homalt | 99.5964 | 99.2947 | 99.8999 | 20.4155 | 374463 | 2660 | 372209 | 373 | 242 | 64.8794 | |
| qzeng-custom | SNP | tv | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | tv | * | het | 99.3391 | 99.1721 | 99.5067 | 29.7409 | 586805 | 4899 | 585578 | 2903 | 302 | 10.4030 | |
| qzeng-custom | SNP | tv | * | * | 99.4379 | 99.2180 | 99.6588 | 26.4392 | 962115 | 7583 | 958619 | 3282 | 549 | 16.7276 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | SNP | tv | tech_badpromoters | het | 94.1176 | 96.9697 | 91.4286 | 54.5455 | 32 | 1 | 32 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 54.5455 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | segdup | homalt | 99.6917 | 99.8765 | 99.5077 | 90.2309 | 3234 | 4 | 3234 | 16 | 16 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7564 | 7 | 0 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | segdup | het | 99.3381 | 99.3569 | 99.3193 | 90.2972 | 5253 | 34 | 5253 | 36 | 2 | 5.5556 | |
| ndellapenna-hhga | SNP | tv | segdup | * | 99.4730 | 99.5546 | 99.3915 | 90.2986 | 8494 | 38 | 8494 | 52 | 18 | 34.6154 | |
| ndellapenna-hhga | SNP | tv | map_siren | homalt | 99.8287 | 99.7274 | 99.9303 | 55.1755 | 17193 | 47 | 17193 | 12 | 10 | 83.3333 | |
| ndellapenna-hhga | SNP | tv | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_siren | het | 99.3169 | 98.8465 | 99.7918 | 55.1017 | 28279 | 330 | 28279 | 59 | 19 | 32.2034 | |
| ndellapenna-hhga | SNP | tv | map_siren | * | 99.4997 | 99.1596 | 99.8422 | 55.1910 | 45544 | 386 | 45544 | 72 | 30 | 41.6667 | |