PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2501-2550 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | map_siren | * | 97.9669 | 98.2321 | 97.7032 | 83.7470 | 7279 | 131 | 7274 | 171 | 29 | 16.9591 | |
| ckim-dragen | INDEL | * | map_siren | het | 97.4637 | 98.1145 | 96.8216 | 84.6377 | 4423 | 85 | 4417 | 145 | 14 | 9.6552 | |
| ckim-dragen | INDEL | * | map_siren | hetalt | 96.2185 | 92.7126 | 100.0000 | 86.2007 | 229 | 18 | 231 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_siren | homalt | 98.9825 | 98.9454 | 99.0196 | 81.6305 | 2627 | 28 | 2626 | 26 | 15 | 57.6923 | |
| ckim-dragen | INDEL | * | segdup | * | 97.1040 | 99.1784 | 95.1146 | 95.2650 | 2535 | 21 | 2531 | 130 | 14 | 10.7692 | |
| ckim-dragen | INDEL | * | segdup | het | 95.8400 | 99.3861 | 92.5383 | 95.9567 | 1457 | 9 | 1451 | 117 | 2 | 1.7094 | |
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdup | homalt | 99.2754 | 99.8958 | 98.6626 | 93.6124 | 959 | 1 | 959 | 13 | 12 | 92.3077 | |
| ckim-dragen | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9979 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9970 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.2683 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 49.3333 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 59.2593 | 33 | 0 | 33 | 0 | 0 | ||
| ckim-dragen | SNP | * | * | * | 99.8268 | 99.9524 | 99.7015 | 21.8489 | 3053166 | 1453 | 3053731 | 9143 | 533 | 5.8296 | |
| ckim-dragen | SNP | * | * | het | 99.7355 | 99.9519 | 99.5199 | 24.5349 | 1872686 | 901 | 1873038 | 9035 | 444 | 4.9142 | |
| ckim-dragen | SNP | * | * | hetalt | 99.3162 | 99.7704 | 98.8662 | 49.3103 | 869 | 2 | 872 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | * | * | homalt | 99.9725 | 99.9534 | 99.9917 | 17.1093 | 1179611 | 550 | 1179821 | 98 | 80 | 81.6327 | |
| ckim-dragen | SNP | * | HG002complexvar | * | 99.9301 | 99.9223 | 99.9379 | 19.4552 | 753795 | 586 | 754278 | 469 | 236 | 50.3198 | |
| ckim-dragen | SNP | * | HG002complexvar | het | 99.9146 | 99.9212 | 99.9081 | 19.1598 | 465130 | 367 | 465401 | 428 | 195 | 45.5607 | |
| ckim-dragen | SNP | * | HG002complexvar | hetalt | 99.8384 | 99.6774 | 100.0000 | 39.2996 | 309 | 1 | 312 | 0 | 0 | ||
| ckim-dragen | SNP | * | HG002complexvar | homalt | 99.9551 | 99.9245 | 99.9858 | 19.8995 | 288356 | 218 | 288565 | 41 | 41 | 100.0000 | |
| ckim-dragen | SNP | * | HG002compoundhet | * | 99.7929 | 99.7831 | 99.8027 | 41.5217 | 25766 | 56 | 25804 | 51 | 26 | 50.9804 | |
| ckim-dragen | SNP | * | HG002compoundhet | het | 99.7322 | 99.6967 | 99.7677 | 46.4046 | 14135 | 43 | 14173 | 33 | 8 | 24.2424 | |
| ckim-dragen | SNP | * | HG002compoundhet | hetalt | 99.8839 | 99.7680 | 100.0000 | 22.0308 | 860 | 2 | 860 | 0 | 0 | ||
| ckim-dragen | SNP | * | HG002compoundhet | homalt | 99.8656 | 99.8980 | 99.8332 | 35.0217 | 10771 | 11 | 10771 | 18 | 18 | 100.0000 | |
| ckim-dragen | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | func_cds | * | 99.5474 | 99.9669 | 99.1313 | 30.5099 | 18144 | 6 | 18144 | 159 | 1 | 0.6289 | |
| ckim-dragen | SNP | * | func_cds | het | 99.2748 | 99.9642 | 98.5949 | 34.9057 | 11157 | 4 | 11157 | 159 | 1 | 0.6289 | |
| ckim-dragen | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 21.8438 | 6977 | 2 | 6977 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7380 | 98.1108 | 99.3732 | 66.6039 | 4674 | 90 | 4756 | 30 | 7 | 23.3333 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6894 | 98.0769 | 99.3097 | 69.5160 | 2958 | 58 | 3021 | 21 | 5 | 23.8095 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8223 | 98.1693 | 99.4839 | 59.8527 | 1716 | 32 | 1735 | 9 | 2 | 22.2222 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8169 | 99.8526 | 99.7812 | 60.4097 | 55549 | 82 | 55631 | 122 | 39 | 31.9672 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.7746 | 99.8617 | 99.6878 | 62.5042 | 35370 | 49 | 35441 | 111 | 28 | 25.2252 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.6087 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8935 | 99.8416 | 99.9455 | 56.0535 | 20167 | 32 | 20178 | 11 | 11 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8639 | 99.1992 | 98.5310 | 73.4964 | 45336 | 366 | 45676 | 681 | 66 | 9.6916 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.4729 | 99.1955 | 97.7608 | 76.5892 | 28481 | 231 | 28728 | 658 | 53 | 8.0547 | |