PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2401-2450 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.0581 | 82.1038 | 84.0349 | 57.1491 | 1725 | 376 | 1637 | 311 | 307 | 98.7138 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.9474 | 92.0408 | 82.3881 | 83.0380 | 451 | 39 | 276 | 59 | 57 | 96.6102 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.5547 | 73.4026 | 99.7027 | 31.1263 | 919 | 333 | 1006 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 73.7279 | 98.8858 | 58.7748 | 45.3888 | 355 | 4 | 355 | 249 | 247 | 99.1968 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8088 | 99.7806 | 99.8371 | 58.7309 | 28198 | 62 | 28192 | 46 | 19 | 41.3043 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7838 | 99.7565 | 99.8111 | 59.5001 | 16389 | 40 | 16384 | 31 | 5 | 16.1290 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3008 | 97.1963 | 99.4307 | 73.6236 | 520 | 15 | 524 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9380 | 99.8938 | 56.3777 | 11289 | 7 | 11284 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.2454 | 92.7419 | 95.7983 | 99.9211 | 115 | 9 | 114 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.7161 | 93.1034 | 96.3855 | 99.8898 | 81 | 6 | 80 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 93.3333 | 87.5000 | 100.0000 | 99.8894 | 14 | 2 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 93.0233 | 95.2381 | 90.9091 | 99.9650 | 20 | 1 | 20 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4504 | 99.3304 | 99.5707 | 59.9377 | 19729 | 133 | 19713 | 85 | 64 | 75.2941 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5579 | 99.4508 | 99.6651 | 63.3945 | 11047 | 61 | 11012 | 37 | 16 | 43.2432 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7395 | 97.7629 | 99.7358 | 42.4788 | 2622 | 60 | 2643 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5645 | 99.8024 | 99.3278 | 58.3031 | 6060 | 12 | 6058 | 41 | 41 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.2111 | 96.5725 | 97.8583 | 68.9818 | 2564 | 91 | 2513 | 55 | 49 | 89.0909 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2860 | 97.0041 | 97.5694 | 83.2558 | 939 | 29 | 843 | 21 | 16 | 76.1905 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1924 | 95.1464 | 99.3283 | 34.1625 | 1137 | 58 | 1183 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0127 | 99.1870 | 94.9318 | 60.8397 | 488 | 4 | 487 | 26 | 25 | 96.1538 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6954 | 99.6733 | 99.7175 | 49.5386 | 6711 | 22 | 6707 | 19 | 12 | 63.1579 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7127 | 99.6993 | 99.7261 | 53.8549 | 3647 | 11 | 3641 | 10 | 3 | 30.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4570 | 99.1333 | 99.7828 | 28.5493 | 915 | 8 | 919 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7677 | 99.8606 | 99.6750 | 47.8198 | 2149 | 3 | 2147 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8778 | 94.5946 | 97.1963 | 63.5434 | 210 | 12 | 208 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 91.5633 | 90.0000 | 93.1818 | 85.7605 | 45 | 5 | 41 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.1193 | 94.4000 | 100.0000 | 27.2727 | 118 | 7 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 55.7522 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | map_l100_m0_e0 | * | 96.2468 | 96.9930 | 95.5120 | 87.5276 | 1516 | 47 | 1511 | 71 | 10 | 14.0845 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | hetalt | 93.5484 | 87.8788 | 100.0000 | 90.0662 | 29 | 4 | 30 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m0_e0 | homalt | 97.6490 | 98.0354 | 97.2656 | 84.3281 | 499 | 10 | 498 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | * | 96.9560 | 97.3229 | 96.5919 | 86.1888 | 3490 | 96 | 3486 | 123 | 19 | 15.4472 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | het | 96.2275 | 97.0917 | 95.3785 | 87.2966 | 2170 | 65 | 2167 | 105 | 9 | 8.5714 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | hetalt | 94.4681 | 89.5161 | 100.0000 | 85.7143 | 111 | 13 | 112 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m1_e0 | homalt | 98.5318 | 98.5330 | 98.5306 | 83.5835 | 1209 | 18 | 1207 | 18 | 10 | 55.5556 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | * | 96.9907 | 97.3734 | 96.6111 | 87.1158 | 3596 | 97 | 3592 | 126 | 19 | 15.0794 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | het | 96.2796 | 97.1391 | 95.4352 | 88.1801 | 2241 | 66 | 2237 | 107 | 9 | 8.4112 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | hetalt | 94.5148 | 89.6000 | 100.0000 | 86.6040 | 112 | 13 | 114 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e0 | homalt | 98.5323 | 98.5726 | 98.4921 | 84.5872 | 1243 | 18 | 1241 | 19 | 10 | 52.6316 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | * | 97.0145 | 97.3908 | 96.6411 | 87.1665 | 3658 | 98 | 3654 | 127 | 20 | 15.7480 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | het | 96.3159 | 97.1831 | 95.4641 | 88.2397 | 2277 | 66 | 2273 | 108 | 10 | 9.2593 | |