PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2351-2400 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2357 | 94.9731 | 99.6087 | 58.9389 | 14642 | 775 | 14763 | 58 | 58 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9650 | 99.8245 | 98.1202 | 75.4285 | 30707 | 54 | 30692 | 588 | 582 | 98.9796 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5070 | 99.4936 | 95.5983 | 68.5706 | 18074 | 92 | 18048 | 831 | 814 | 97.9543 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7158 | 97.4490 | 97.9841 | 76.9231 | 2101 | 55 | 2090 | 43 | 21 | 48.8372 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9211 | 97.8503 | 97.9920 | 79.1387 | 1229 | 27 | 1220 | 25 | 7 | 28.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2907 | 87.4251 | 100.0000 | 68.5535 | 146 | 21 | 150 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2974 | 99.0450 | 97.5610 | 73.6240 | 726 | 7 | 720 | 18 | 14 | 77.7778 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4940 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5206 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7003 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5015 | 99.5702 | 99.4329 | 75.1639 | 5097 | 22 | 5085 | 29 | 11 | 37.9310 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5329 | 99.6333 | 99.4326 | 76.3741 | 2989 | 11 | 2979 | 17 | 2 | 11.7647 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0439 | 96.5665 | 99.5671 | 75.8368 | 225 | 8 | 230 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6285 | 99.8409 | 99.4171 | 72.8645 | 1883 | 3 | 1876 | 11 | 8 | 72.7273 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6964 | 99.7792 | 99.6138 | 75.7541 | 3615 | 8 | 3611 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7661 | 99.8597 | 99.6727 | 76.2860 | 2135 | 3 | 2132 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.4349 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7413 | 99.9261 | 99.5572 | 74.4050 | 1352 | 1 | 1349 | 6 | 4 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.0947 | 92.4215 | 93.7777 | 64.0101 | 5622 | 461 | 5501 | 365 | 358 | 98.0822 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2722 | 96.5106 | 96.0350 | 77.8916 | 2102 | 76 | 1865 | 77 | 72 | 93.5065 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4949 | 86.3386 | 99.5964 | 37.6133 | 2351 | 372 | 2468 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.9231 | 98.9002 | 80.7746 | 59.1871 | 1169 | 13 | 1168 | 278 | 276 | 99.2806 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.0198 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1935 | 96.8999 | 97.4889 | 57.0530 | 36727 | 1175 | 36532 | 941 | 927 | 98.5122 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8906 | 98.8643 | 98.9168 | 67.1655 | 14451 | 166 | 14063 | 154 | 144 | 93.5065 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1377 | 92.8872 | 99.6239 | 30.9811 | 12785 | 979 | 12979 | 49 | 49 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.1110 | 99.6849 | 92.7845 | 59.2169 | 9491 | 30 | 9490 | 738 | 734 | 99.4580 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9458 | 97.7276 | 98.1651 | 56.3127 | 31265 | 727 | 31189 | 583 | 575 | 98.6278 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2927 | 99.2413 | 99.3442 | 65.4836 | 12426 | 95 | 12270 | 81 | 75 | 92.5926 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9831 | 94.4710 | 99.6324 | 29.8141 | 10491 | 614 | 10571 | 39 | 39 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.1997 | 99.7848 | 94.7452 | 59.6307 | 8348 | 18 | 8348 | 463 | 461 | 99.5680 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4130 | 97.1455 | 97.6820 | 62.4233 | 42098 | 1237 | 41887 | 994 | 949 | 95.4728 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8987 | 98.8832 | 98.9142 | 71.1221 | 17620 | 199 | 17218 | 189 | 154 | 81.4815 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1413 | 92.8877 | 99.6311 | 33.7242 | 13034 | 998 | 13234 | 49 | 49 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.6367 | 99.6517 | 93.7987 | 63.9277 | 11444 | 40 | 11435 | 756 | 746 | 98.6772 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5070 | 99.4936 | 95.5983 | 68.5706 | 18074 | 92 | 18048 | 831 | 814 | 97.9543 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.1771 | 97.9914 | 98.3635 | 52.4340 | 35857 | 735 | 35764 | 595 | 553 | 92.9412 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.2504 | 99.2513 | 99.2495 | 62.6333 | 15642 | 118 | 15472 | 117 | 78 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.9002 | 94.3962 | 99.5408 | 32.4909 | 9888 | 587 | 9971 | 46 | 46 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.8109 | 99.7103 | 95.9825 | 45.9159 | 10327 | 30 | 10321 | 432 | 429 | 99.3056 | |