PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2251-2300 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | homalt | 90.4763 | 89.7867 | 91.1766 | 62.8157 | 24712 | 2811 | 24604 | 2381 | 1867 | 78.4124 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | * | 85.2411 | 82.0102 | 88.7370 | 71.8319 | 61292 | 13445 | 61099 | 7755 | 2048 | 26.4088 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | het | 81.9772 | 77.3999 | 87.1298 | 75.6982 | 36299 | 10599 | 36219 | 5350 | 161 | 3.0094 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | homalt | 90.5022 | 89.8151 | 91.2000 | 62.7951 | 24965 | 2831 | 24852 | 2398 | 1881 | 78.4404 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | * | 77.7410 | 73.0049 | 83.1343 | 80.5630 | 14152 | 5233 | 14132 | 2867 | 775 | 27.0317 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | het | 73.0283 | 66.5824 | 80.8560 | 84.3182 | 8432 | 4232 | 8426 | 1995 | 66 | 3.3083 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | homalt | 85.9540 | 85.1609 | 86.7620 | 68.6495 | 5716 | 996 | 5702 | 870 | 708 | 81.3793 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | * | 80.8628 | 76.5085 | 85.7426 | 76.0516 | 34679 | 10648 | 34610 | 5755 | 1482 | 25.7515 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | het | 76.3493 | 70.6009 | 83.1168 | 80.0504 | 20045 | 8347 | 20022 | 4067 | 129 | 3.1719 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | homalt | 88.0175 | 86.4537 | 89.6388 | 65.9316 | 14615 | 2290 | 14569 | 1684 | 1350 | 80.1663 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | * | 81.1188 | 76.8380 | 85.9047 | 77.6345 | 35901 | 10822 | 35830 | 5879 | 1516 | 25.7867 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | het | 76.6942 | 71.0212 | 83.3520 | 81.2570 | 20822 | 8496 | 20798 | 4154 | 134 | 3.2258 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | homalt | 88.1697 | 86.6763 | 89.7155 | 68.5746 | 15060 | 2315 | 15013 | 1721 | 1379 | 80.1278 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | * | 81.1911 | 76.9289 | 85.9532 | 77.6472 | 36312 | 10890 | 36237 | 5922 | 1525 | 25.7514 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | het | 76.8097 | 71.1707 | 83.4191 | 81.2554 | 21095 | 8545 | 21070 | 4188 | 136 | 3.2474 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | homalt | 88.1920 | 86.6872 | 89.7500 | 68.5967 | 15198 | 2334 | 15148 | 1730 | 1386 | 80.1156 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | * | 75.3031 | 70.4787 | 80.8364 | 85.2202 | 8480 | 3552 | 8466 | 2007 | 507 | 25.2616 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | het | 70.4472 | 64.1940 | 78.0503 | 88.1313 | 5097 | 2843 | 5092 | 1432 | 47 | 3.2821 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | hetalt | 33.3333 | 33.3333 | 33.3333 | 90.9091 | 1 | 2 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | homalt | 84.0715 | 82.7097 | 85.4790 | 75.1182 | 3382 | 707 | 3373 | 573 | 459 | 80.1047 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | * | 77.9234 | 73.3052 | 83.1626 | 80.2472 | 22438 | 8171 | 22404 | 4536 | 1124 | 24.7795 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | het | 72.7287 | 66.8410 | 79.7539 | 83.7508 | 12911 | 6405 | 12897 | 3274 | 108 | 3.2987 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 80.0000 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | homalt | 86.3052 | 84.4052 | 88.2927 | 70.7708 | 9515 | 1758 | 9495 | 1259 | 1014 | 80.5401 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | * | 78.3493 | 73.8101 | 83.4833 | 81.5713 | 23510 | 8342 | 23473 | 4644 | 1150 | 24.7631 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | het | 73.2869 | 67.4862 | 80.1784 | 84.7273 | 13587 | 6546 | 13571 | 3355 | 112 | 3.3383 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | homalt | 86.5638 | 84.7166 | 88.4932 | 73.1740 | 9911 | 1788 | 9890 | 1286 | 1036 | 80.5599 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | * | 78.3942 | 73.8684 | 83.5109 | 81.5923 | 23793 | 8417 | 23753 | 4690 | 1163 | 24.7974 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | het | 73.3676 | 67.5883 | 80.2276 | 84.7439 | 13763 | 6600 | 13747 | 3388 | 114 | 3.3648 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | homalt | 86.5594 | 84.7045 | 88.4973 | 73.1841 | 10018 | 1809 | 9994 | 1299 | 1047 | 80.6005 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | * | 67.3632 | 63.4660 | 71.7703 | 95.4310 | 1355 | 780 | 1350 | 531 | 99 | 18.6441 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | het | 62.5646 | 57.7025 | 68.3215 | 96.1752 | 869 | 637 | 867 | 402 | 13 | 3.2338 | |
| ciseli-custom | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | * | map_l250_m0_e0 | homalt | 78.0848 | 77.2655 | 78.9216 | 92.3251 | 486 | 143 | 483 | 129 | 86 | 66.6667 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | * | 68.5054 | 64.2204 | 73.4031 | 91.7933 | 4638 | 2584 | 4631 | 1678 | 322 | 19.1895 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | het | 61.9329 | 56.9506 | 67.8706 | 93.2521 | 2708 | 2047 | 2706 | 1281 | 41 | 3.2006 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | homalt | 80.5510 | 78.2785 | 82.9594 | 86.9401 | 1928 | 535 | 1923 | 395 | 279 | 70.6329 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | * | 69.1818 | 64.6798 | 74.3575 | 92.1767 | 5100 | 2785 | 5092 | 1756 | 343 | 19.5330 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | het | 62.7486 | 57.4894 | 69.0669 | 93.5182 | 2986 | 2208 | 2983 | 1336 | 41 | 3.0689 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.7407 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | homalt | 80.9434 | 78.5927 | 83.4390 | 87.8922 | 2111 | 575 | 2106 | 418 | 300 | 71.7703 | |