PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1901-1950 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | map_l250_m0_e0 | * | 95.4584 | 94.5667 | 96.3671 | 93.6675 | 2019 | 116 | 2016 | 76 | 21 | 27.6316 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | het | 94.5598 | 94.1567 | 94.9664 | 94.4554 | 1418 | 88 | 1415 | 75 | 20 | 26.6667 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | map_l250_m0_e0 | homalt | 97.6442 | 95.5485 | 99.8339 | 90.2320 | 601 | 28 | 601 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | * | 96.0890 | 95.7906 | 96.3892 | 89.6069 | 6918 | 304 | 6914 | 259 | 62 | 23.9382 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | het | 95.0712 | 95.5205 | 94.6261 | 91.1826 | 4542 | 213 | 4543 | 258 | 61 | 23.6434 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m1_e0 | homalt | 98.0976 | 96.3053 | 99.9578 | 83.7177 | 2372 | 91 | 2371 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | * | 96.1788 | 95.9417 | 96.4172 | 90.1898 | 7565 | 320 | 7562 | 281 | 65 | 23.1317 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | het | 95.2059 | 95.7451 | 94.6728 | 91.6166 | 4973 | 221 | 4976 | 280 | 64 | 22.8571 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m2_e0 | homalt | 98.1039 | 96.3142 | 99.9613 | 85.0046 | 2587 | 99 | 2586 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | * | 96.1831 | 95.9309 | 96.4367 | 90.2654 | 7662 | 325 | 7659 | 283 | 66 | 23.3216 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | het | 95.2117 | 95.7257 | 94.7032 | 91.6862 | 5039 | 225 | 5042 | 282 | 65 | 23.0496 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m2_e1 | homalt | 98.1075 | 96.3208 | 99.9618 | 85.0801 | 2618 | 100 | 2617 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_siren | * | 98.2653 | 98.4743 | 98.0572 | 58.9696 | 143997 | 2231 | 143999 | 2853 | 550 | 19.2780 | |
| cchapple-custom | SNP | * | map_siren | het | 97.7546 | 98.5944 | 96.9290 | 63.2688 | 89712 | 1279 | 89826 | 2846 | 543 | 19.0794 | |
| cchapple-custom | SNP | * | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_siren | homalt | 99.1241 | 98.2758 | 99.9871 | 48.6990 | 54205 | 951 | 54173 | 7 | 7 | 100.0000 | |
| cchapple-custom | SNP | * | segdup | * | 99.5856 | 99.8219 | 99.3504 | 91.8828 | 28017 | 50 | 27988 | 183 | 25 | 13.6612 | |
| cchapple-custom | SNP | * | segdup | het | 99.4246 | 99.7863 | 99.0654 | 93.2744 | 17280 | 37 | 17278 | 163 | 5 | 3.0675 | |
| cchapple-custom | SNP | * | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | segdup | homalt | 99.8463 | 99.8790 | 99.8136 | 87.7694 | 10730 | 13 | 10710 | 20 | 20 | 100.0000 | |
| cchapple-custom | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | * | tech_badpromoters | * | 98.0932 | 98.7261 | 97.4684 | 50.9317 | 155 | 2 | 154 | 4 | 1 | 25.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 56.1111 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | tech_badpromoters | homalt | 98.7421 | 98.7500 | 98.7342 | 44.3662 | 79 | 1 | 78 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | * | * | 83.5453 | 82.5314 | 84.5844 | 60.0787 | 284352 | 60186 | 284718 | 51890 | 36584 | 70.5030 | |
| ciseli-custom | INDEL | * | * | het | 87.9280 | 88.9146 | 86.9631 | 62.2120 | 172609 | 21520 | 174074 | 26096 | 13945 | 53.4373 | |
| ciseli-custom | INDEL | * | * | hetalt | 0.0000 | 3.4156 | 0.0000 | 0.0000 | 862 | 24375 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | * | homalt | 84.6742 | 88.5829 | 81.0959 | 56.4739 | 110881 | 14291 | 110644 | 25792 | 22639 | 87.7753 | |
| ciseli-custom | INDEL | * | HG002complexvar | * | 81.0665 | 80.3871 | 81.7575 | 57.5412 | 61845 | 15089 | 61574 | 13739 | 8055 | 58.6287 | |
| ciseli-custom | INDEL | * | HG002complexvar | het | 83.6520 | 81.8863 | 85.4955 | 58.3237 | 37838 | 8370 | 38019 | 6450 | 2732 | 42.3566 | |
| ciseli-custom | INDEL | * | HG002complexvar | hetalt | 0.0000 | 5.8394 | 0.0000 | 0.0000 | 216 | 3483 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | HG002complexvar | homalt | 81.7869 | 88.0268 | 76.3731 | 56.3608 | 23791 | 3236 | 23555 | 7287 | 5323 | 73.0479 | |
| ciseli-custom | INDEL | * | HG002compoundhet | * | 10.2161 | 9.0332 | 11.7555 | 64.4950 | 2706 | 27250 | 3448 | 25883 | 22293 | 86.1299 | |
| ciseli-custom | INDEL | * | HG002compoundhet | het | 30.5417 | 31.9071 | 29.2883 | 74.6335 | 1305 | 2785 | 2889 | 6975 | 4438 | 63.6272 | |
| ciseli-custom | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 3.4114 | 0.0000 | 0.0000 | 859 | 24321 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | HG002compoundhet | homalt | 5.5419 | 79.0087 | 2.8717 | 55.4798 | 542 | 144 | 559 | 18907 | 17855 | 94.4359 | |
| ciseli-custom | INDEL | * | decoy | * | 77.7778 | 70.0000 | 87.5000 | 99.9456 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9611 | 4 | 2 | 4 | 0 | 0 | ||
| ciseli-custom | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | decoy | homalt | 85.7143 | 100.0000 | 75.0000 | 99.9092 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | func_cds | * | 84.1100 | 83.3708 | 84.8624 | 37.1758 | 371 | 74 | 370 | 66 | 30 | 45.4545 | |
| ciseli-custom | INDEL | * | func_cds | het | 79.1762 | 80.8411 | 77.5785 | 43.6869 | 173 | 41 | 173 | 50 | 20 | 40.0000 | |