PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1351-1400 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | * | * | 99.9296 | 99.9673 | 99.8919 | 18.9151 | 3053620 | 999 | 3053471 | 3303 | 195 | 5.9037 | |
| bgallagher-sentieon | SNP | * | * | het | 99.8943 | 99.9607 | 99.8280 | 19.9469 | 1872851 | 736 | 1872726 | 3227 | 129 | 3.9975 | |
| bgallagher-sentieon | SNP | * | * | hetalt | 99.7699 | 99.5408 | 100.0000 | 40.6164 | 867 | 4 | 867 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | * | homalt | 99.9858 | 99.9781 | 99.9936 | 17.1960 | 1179902 | 259 | 1179878 | 76 | 66 | 86.8421 | |
| bgallagher-sentieon | SNP | * | HG002complexvar | * | 99.9538 | 99.9332 | 99.9744 | 19.0217 | 753877 | 504 | 753722 | 193 | 84 | 43.5233 | |
| bgallagher-sentieon | SNP | * | HG002complexvar | het | 99.9449 | 99.9235 | 99.9662 | 18.4844 | 465141 | 356 | 465011 | 157 | 50 | 31.8471 | |
| bgallagher-sentieon | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | HG002complexvar | homalt | 99.9685 | 99.9494 | 99.9875 | 19.8511 | 288428 | 146 | 288403 | 36 | 34 | 94.4444 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | * | 99.8063 | 99.8025 | 99.8102 | 41.0420 | 25771 | 51 | 25764 | 49 | 25 | 51.0204 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | het | 99.7460 | 99.7320 | 99.7601 | 45.7386 | 14140 | 38 | 14138 | 34 | 11 | 32.3529 | |
| bgallagher-sentieon | SNP | * | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.4231 | 858 | 4 | 858 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.9165 | 99.8609 | 34.8774 | 10773 | 9 | 10768 | 15 | 14 | 93.3333 | |
| bgallagher-sentieon | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | func_cds | * | 99.8899 | 99.9669 | 99.8129 | 24.1761 | 18144 | 6 | 18141 | 34 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | func_cds | het | 99.8344 | 99.9731 | 99.6961 | 26.0085 | 11158 | 3 | 11155 | 34 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | func_cds | homalt | 99.9785 | 99.9570 | 100.0000 | 20.9518 | 6976 | 3 | 6976 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2848 | 99.0764 | 99.4941 | 66.4545 | 4720 | 44 | 4720 | 24 | 5 | 20.8333 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.0536 | 98.9058 | 99.2019 | 69.0574 | 2983 | 33 | 2983 | 24 | 5 | 20.8333 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6844 | 99.3707 | 100.0000 | 60.6925 | 1737 | 11 | 1737 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6082 | 99.8778 | 99.3401 | 60.0690 | 55563 | 68 | 55552 | 369 | 30 | 8.1301 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4306 | 99.8701 | 98.9950 | 61.8984 | 35373 | 46 | 35362 | 359 | 20 | 5.5710 | |
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9232 | 99.8960 | 99.9505 | 56.3257 | 20178 | 21 | 20178 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2960 | 99.5274 | 99.0657 | 69.8134 | 45486 | 216 | 45486 | 429 | 30 | 6.9930 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0051 | 99.4671 | 98.5473 | 71.4531 | 28559 | 153 | 28559 | 421 | 23 | 5.4632 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7905 | 99.6289 | 99.9527 | 66.4771 | 16912 | 63 | 16912 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4872 | 99.3714 | 99.6033 | 48.0102 | 4268 | 27 | 4268 | 17 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2546 | 99.1437 | 99.3657 | 50.4529 | 2663 | 23 | 2663 | 17 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8755 | 99.7514 | 100.0000 | 43.3263 | 1605 | 4 | 1605 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7497 | 99.8706 | 99.6290 | 54.7353 | 6176 | 8 | 6176 | 23 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6192 | 99.8219 | 99.4173 | 56.4253 | 3924 | 7 | 3924 | 23 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 51.4033 | 2251 | 1 | 2251 | 0 | 0 | ||