PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
951-1000 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9239 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | homalt | 92.1659 | 86.2069 | 99.0099 | 96.0531 | 100 | 16 | 100 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_siren | * | 93.9319 | 90.2024 | 97.9830 | 94.1412 | 6684 | 726 | 6704 | 138 | 23 | 16.6667 | |
| asubramanian-gatk | INDEL | * | map_siren | het | 91.9143 | 87.2227 | 97.1393 | 86.6717 | 3932 | 576 | 3939 | 116 | 14 | 12.0690 | |
| asubramanian-gatk | INDEL | * | map_siren | hetalt | 96.0386 | 93.1174 | 99.1489 | 87.5133 | 230 | 17 | 233 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | map_siren | homalt | 97.0575 | 94.9906 | 99.2163 | 82.1825 | 2522 | 133 | 2532 | 20 | 9 | 45.0000 | |
| asubramanian-gatk | INDEL | * | segdup | * | 98.4487 | 98.0047 | 98.8968 | 98.3850 | 2505 | 51 | 2510 | 28 | 10 | 35.7143 | |
| asubramanian-gatk | INDEL | * | segdup | het | 98.2193 | 97.7490 | 98.6942 | 95.9225 | 1433 | 33 | 1436 | 19 | 2 | 10.5263 | |
| asubramanian-gatk | INDEL | * | segdup | hetalt | 95.6238 | 92.3077 | 99.1870 | 94.8211 | 120 | 10 | 122 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | segdup | homalt | 99.1667 | 99.1667 | 99.1667 | 93.6609 | 952 | 8 | 952 | 8 | 7 | 87.5000 | |
| asubramanian-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9985 | 1 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | * | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 69.0987 | 72 | 4 | 72 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | homalt | 95.2381 | 90.9091 | 100.0000 | 60.5263 | 30 | 3 | 30 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | * | * | 98.9379 | 97.9985 | 99.8954 | 21.0150 | 2993480 | 61139 | 2993343 | 3133 | 150 | 4.7877 | |
| asubramanian-gatk | SNP | * | * | het | 98.9725 | 98.1066 | 99.8538 | 23.0377 | 1838113 | 35474 | 1837999 | 2691 | 109 | 4.0505 | |
| asubramanian-gatk | SNP | * | * | hetalt | 94.8157 | 94.4891 | 95.1445 | 47.6709 | 823 | 48 | 823 | 42 | 2 | 4.7619 | |
| asubramanian-gatk | SNP | * | * | homalt | 98.8858 | 97.8294 | 99.9654 | 17.5292 | 1154544 | 25617 | 1154521 | 400 | 39 | 9.7500 | |
| asubramanian-gatk | SNP | * | HG002complexvar | * | 98.2310 | 96.5837 | 99.9354 | 19.5730 | 728609 | 25772 | 728466 | 471 | 54 | 11.4650 | |
| asubramanian-gatk | SNP | * | HG002complexvar | het | 98.3318 | 96.7914 | 99.9221 | 19.0611 | 450561 | 14936 | 450442 | 351 | 31 | 8.8319 | |
| asubramanian-gatk | SNP | * | HG002complexvar | hetalt | 93.8843 | 91.6129 | 96.2712 | 41.3519 | 284 | 26 | 284 | 11 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | HG002complexvar | homalt | 98.0724 | 96.2540 | 99.9608 | 20.3588 | 277764 | 10810 | 277740 | 109 | 23 | 21.1009 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | * | 97.7516 | 96.6501 | 98.8785 | 41.8929 | 24957 | 865 | 24950 | 283 | 28 | 9.8940 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | het | 97.7049 | 96.5369 | 98.9015 | 46.6042 | 13687 | 491 | 13685 | 152 | 23 | 15.1316 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | hetalt | 95.0437 | 94.5476 | 95.5451 | 26.8439 | 815 | 47 | 815 | 38 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | homalt | 98.0307 | 96.9672 | 99.1179 | 35.4971 | 10455 | 327 | 10450 | 93 | 5 | 5.3763 | |
| asubramanian-gatk | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | func_cds | * | 99.6470 | 99.5537 | 99.7405 | 30.0602 | 18069 | 81 | 18066 | 47 | 1 | 2.1277 | |
| asubramanian-gatk | SNP | * | func_cds | het | 99.5968 | 99.6147 | 99.5789 | 34.4684 | 11118 | 43 | 11115 | 47 | 1 | 2.1277 | |
| asubramanian-gatk | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | func_cds | homalt | 99.7270 | 99.4555 | 100.0000 | 21.4908 | 6941 | 38 | 6941 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.6630 | 98.1948 | 97.1369 | 68.1953 | 4678 | 86 | 4682 | 138 | 8 | 5.7971 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.5411 | 97.9111 | 97.1738 | 70.8692 | 2953 | 63 | 2957 | 86 | 7 | 8.1395 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.5490 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.2626 | 98.6842 | 97.8446 | 62.1511 | 1725 | 23 | 1725 | 38 | 1 | 2.6316 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6773 | 98.9323 | 98.4237 | 61.2579 | 55037 | 594 | 55072 | 882 | 34 | 3.8549 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5829 | 98.9638 | 98.2048 | 63.2584 | 35052 | 367 | 35066 | 641 | 28 | 4.3682 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 42.1053 | 92.3077 | 27.2727 | 80.4444 | 12 | 1 | 12 | 32 | 1 | 3.1250 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9233 | 98.8811 | 98.9655 | 57.0313 | 19973 | 226 | 19994 | 209 | 5 | 2.3923 | |