PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
51-100 / 86044 show all
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
34.8485
0.0000
0.0000
4686000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
81.0388
91.2786
72.8646
69.9021
12351181254467416
89.0792
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.6989
27.4371
43.6639
50.1227
16694414221928632250
78.5889
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
42.8855
43.0211
42.7507
47.9409
9371241177823811894
79.5464
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
13.4043
0.0000
0.0000
3652358000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
37.6387
31.0491
47.7790
58.0455
367815441482356
73.8589
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
98.8095
21100
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3871
20100
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
51.7221
46.8234
57.7656
39.6200
1774720155247261807814175
78.4102
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
60.1585
64.6439
56.2551
36.6040
94495168186931453611429
78.6255
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
24.8474
0.0000
0.0000
342010344000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
56.5143
51.2341
63.0078
48.1760
48784643603335422746
77.5268
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
54.6126
50.3907
59.6067
38.4218
1612115871225511528211968
78.3144
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
62.7686
68.2214
58.1230
35.1882
8542397916951122139571
78.3673
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
27.5552
0.0000
0.0000
30608045000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
58.8351
54.0163
64.5980
47.2721
45193847560030692397
78.1036
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
54.3121
49.8996
59.5807
47.5940
2162421711287001947015099
77.5501
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
61.2290
64.8241
58.0117
44.0961
115516268209371515411698
77.1941
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
24.8860
0.0000
0.0000
349210540000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
60.5878
57.3058
64.2686
55.8452
65814903776343163401
78.7998
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
58.0405
54.1246
62.5672
55.8642
3537129980435582606019700
75.5948
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.1592
62.6870
61.6403
53.4558
1910711373300861872313632
72.8088
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
25.3457
0.0000
0.0000
423412471000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
65.4735
66.2226
64.7412
60.6352
1203061361347273376068
82.7041
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5093
59.8218
67.6813
39.7409
2189014702302171442911301
78.3214
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50het
69.5027
72.7855
66.5031
38.8732
11471428921148106528272
77.6568
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
27.5800
0.0000
0.0000
28897586000
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
71.6357
72.7045
70.5979
41.7864
75302827906937773029
80.1959
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200*
23.1772
16.4208
39.3809
42.5111
3451756458705585
82.9787
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200het
28.9696
23.8776
36.8222
43.6389
117373292501425
84.8303
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
7.1086
0.0000
0.0000
891163000
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
41.5658
38.7187
44.8649
39.9351
139220166204160
78.4314
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.9743
92.1019
91.8470
57.2556
2602822322742024341757
72.1857
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.5741
90.2916
94.9750
58.0257
14834159515952844289
34.2417
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
24.4860
0.0000
0.0000
131404000
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.6051
97.9373
87.8236
56.1886
110632331146815901468
92.3270
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
51.7766
41.1290
69.8630
99.9464
5173512218
81.8182
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
52.8000
37.9310
86.8421
99.9569
33543355
100.0000
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
6.2500
0.0000
0.0000
115000
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
62.8983
80.9524
51.4286
99.9273
174181713
76.4706
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
68.5075
66.4183
70.7325
47.6018
1319266701543163854862
76.1472
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
71.3041
72.8754
69.7991
45.2762
809530131062945993296
71.6678
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
30.4251
0.0000
0.0000
8161866000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
71.6772
70.5040
72.8901
52.2851
42811791480217861566
87.6820
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
30.1806
24.9718
38.1353
46.7618
663199295315461250
80.8538
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
40.2175
43.3884
37.4784
42.9557
42054886814481173
81.0083
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
14.8954
0.0000
0.0000
1781017000
anovak-vgINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
20.5715
13.2114
46.4481
71.1356
65427859877
78.5714