PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
86001-86044 / 86044 show all
ckim-dragenSNPtvfunc_cds*
99.3521
99.9771
98.7347
37.1039
437014370560
0.0000
raldana-dualsentieonSNPtvmap_l150_m1_e0*
98.9969
99.0469
98.9470
74.2022
10808104108061153
2.6087
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7843
99.6517
99.9173
61.4911
10873381086995
55.5556
rpoplin-dv42SNPtvmap_l250_m0_e0*
96.8421
96.2092
97.4834
91.8033
736297361914
73.6842
ckim-isaacSNPtvmap_l150_m1_e0*
67.1487
50.6415
99.6215
77.0250
552653865527217
33.3333
dgrover-gatkSNPtvdecoy*
0.0000
100.0000
00000
gduggal-bwaplatSNPtvHG002compoundhet*
87.7776
87.6611
87.8944
56.9502
7822110178561082151
13.9556
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6909
99.6293
99.7526
66.4708
4838184838128
66.6667
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_triTR_11to50het
98.3094
97.8017
98.8224
46.8984
2091472098251
4.0000
astatham-gatkSNPtvHG002compoundhethet
98.5818
97.4321
99.7590
55.5988
455312045531111
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.9134
97.0765
98.7647
80.5287
8866267887511113
11.7117
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.2347
98.2481
96.2420
74.4091
8973160911735612
3.3708
bgallagher-sentieonSNPtvmap_l125_m2_e0het
98.8667
99.4350
98.3049
76.2296
10383591038117922
12.2905
mlin-fermikitSNPtvmap_l125_m2_e1het
61.6520
44.9730
97.9955
67.0300
474658074742971
1.0309
cchapple-customSNPtvtech_badpromotershet
95.5224
96.9697
94.1176
64.2105
3213220
0.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0het
98.6590
97.7984
99.5349
67.9349
706315970633313
39.3939
qzeng-customSNPtvmap_l100_m2_e1het
88.6428
81.2273
97.5483
82.6203
12946299212931325244
75.0769
ckim-dragenSNPtvfunc_cdshet
98.9383
99.9624
97.9351
42.1131
265612656560
0.0000
raldana-dualsentieonSNPtvmap_l150_m1_e0het
98.5915
98.7763
98.4075
76.8439
68618568591111
0.9009
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.8503
99.8005
99.9001
62.4759
700514700173
42.8571
rpoplin-dv42SNPtvmap_l250_m0_e0het
97.0280
97.0280
97.0280
91.3647
555175551712
70.5882
ckim-isaacSNPtvmap_l150_m1_e0het
71.1670
55.3988
99.4831
79.3620
384830983849206
30.0000
dgrover-gatkSNPtvdecoyhet
0.0000
100.0000
00000
gduggal-bwaplatSNPtvHG002compoundhethet
81.9141
84.1429
79.8002
62.7770
39327413994101184
8.3086
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.6439
99.6762
99.6117
68.6485
3078103078128
66.6667
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
60.0000
100.0000
42.8571
84.3049
15015200
0.0000
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
94.1176
100.0000
88.8889
88.7500
1501622
100.0000
bgallagher-sentieonSNPtvmap_l125_m2_e0hetalt
96.5517
93.3333
100.0000
76.0684
2822800
mlin-fermikitSNPtvmap_l125_m2_e1hetalt
46.1538
30.0000
100.0000
76.9231
921900
cchapple-customSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvmap_l100_m0_e0hetalt
90.3226
87.5000
93.3333
79.1667
1421411
100.0000
qzeng-customSNPtvmap_l100_m2_e1hetalt
82.1918
69.7674
100.0000
88.8476
30133000
ckim-dragenSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
raldana-dualsentieonSNPtvmap_l150_m1_e0hetalt
94.7368
90.0000
100.0000
74.2857
1821800
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-isaacSNPtvmap_l150_m1_e0hetalt
57.1429
40.0000
100.0000
85.7143
812800
dgrover-gatkSNPtvdecoyhetalt
0.0000
100.0000
00000
gduggal-bwaplatSNPtvHG002compoundhethetalt
96.3319
92.9234
100.0000
22.7493
8016179800
jli-customSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100