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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85851-85900 / 86044 show all | |||||||||||||||
ghariani-varprowl | SNP | tv | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | * | homalt | 99.6533 | 99.9547 | 99.3538 | 23.4817 | 376950 | 171 | 377023 | 2452 | 1194 | 48.6949 | |
ghariani-varprowl | SNP | tv | HG002complexvar | * | 98.9457 | 99.5507 | 98.3479 | 26.3760 | 245046 | 1106 | 245266 | 4120 | 790 | 19.1748 | |
ghariani-varprowl | SNP | tv | HG002complexvar | het | 98.7696 | 99.5137 | 98.0366 | 26.9661 | 149998 | 733 | 150145 | 3007 | 54 | 1.7958 | |
ghariani-varprowl | SNP | tv | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 310 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | HG002complexvar | homalt | 99.3856 | 99.9338 | 98.8434 | 25.4168 | 95048 | 63 | 95121 | 1113 | 736 | 66.1276 | |
ghariani-varprowl | SNP | tv | HG002compoundhet | * | 76.9891 | 85.1395 | 70.2629 | 63.5595 | 7597 | 1326 | 7724 | 3269 | 1134 | 34.6895 | |
ghariani-varprowl | SNP | tv | HG002compoundhet | het | 78.1241 | 90.1776 | 68.9129 | 69.5656 | 4214 | 459 | 4336 | 1956 | 10 | 0.5112 | |
ghariani-varprowl | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 862 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | HG002compoundhet | homalt | 83.7163 | 99.8524 | 72.0698 | 50.4793 | 3383 | 5 | 3388 | 1313 | 1124 | 85.6055 | |
ghariani-varprowl | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | func_cds | * | 99.2142 | 99.6568 | 98.7755 | 38.2266 | 4356 | 15 | 4356 | 54 | 5 | 9.2593 | |
ghariani-varprowl | SNP | tv | func_cds | het | 99.0291 | 99.8118 | 98.2586 | 43.0471 | 2652 | 5 | 2652 | 47 | 0 | 0.0000 | |
ghariani-varprowl | SNP | tv | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | func_cds | homalt | 99.7950 | 100.0000 | 99.5909 | 28.7083 | 1704 | 0 | 1704 | 7 | 5 | 71.4286 | |
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.0162 | 97.8232 | 81.6639 | 77.4026 | 1483 | 33 | 1492 | 335 | 22 | 6.5672 | |
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 85.1516 | 96.8750 | 75.9593 | 78.6419 | 961 | 31 | 970 | 307 | 3 | 0.9772 | |
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.2067 | 99.6183 | 94.9091 | 73.8841 | 522 | 2 | 522 | 28 | 19 | 67.8571 | |
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 95.6349 | 98.9595 | 92.5264 | 70.1656 | 27390 | 288 | 27497 | 2221 | 284 | 12.7870 | |
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.4227 | 98.4802 | 90.6863 | 72.2353 | 17301 | 267 | 17390 | 1786 | 11 | 0.6159 | |
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8554 | 99.9208 | 95.8736 | 65.4859 | 10089 | 8 | 10107 | 435 | 273 | 62.7586 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 81.6587 | 97.5693 | 70.2096 | 85.8214 | 8911 | 222 | 8977 | 3809 | 26 | 0.6826 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.3614 | 99.5206 | 93.3967 | 80.5951 | 5397 | 26 | 5403 | 382 | 170 | 44.5026 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.7049 | 99.1018 | 92.5331 | 67.6378 | 1324 | 12 | 1326 | 107 | 8 | 7.4766 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.0441 | 98.5965 | 89.8936 | 70.5698 | 843 | 12 | 845 | 95 | 0 | 0.0000 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7680 | 100.0000 | 97.5659 | 60.0486 | 481 | 0 | 481 | 12 | 8 | 66.6667 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.6108 | 99.3560 | 92.1377 | 74.6935 | 2160 | 14 | 2168 | 185 | 14 | 7.5676 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.0681 | 99.1348 | 89.4942 | 76.3243 | 1375 | 12 | 1380 | 162 | 1 | 0.6173 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.4998 | 99.8728 | 97.1640 | 70.8797 | 785 | 1 | 788 | 23 | 13 | 56.5217 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.5502 | 99.5139 | 91.8902 | 78.2560 | 1433 | 7 | 1439 | 127 | 7 | 5.5118 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.8264 | 99.4530 | 88.8023 | 79.5703 | 909 | 5 | 912 | 115 | 1 | 0.8696 | |
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7811 | 99.8095 | 97.7737 | 75.2184 | 524 | 1 | 527 | 12 | 6 | 50.0000 |