PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85351-85400 / 86044 show all
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
40.0000
100.0000
25.0000
68.2540
505150
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.2657
99.6737
96.8970
47.8485
2749927488817
19.3182
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
15.4525
83.3333
8.5158
71.3389
357353761
0.2660
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
14.5882
86.1111
7.9692
66.8654
315313581
0.2793
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
77.7778
00040
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
33.3333
66.6667
22.2222
92.5620
424140
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50*
94.3491
99.6812
89.5584
44.0081
34391134484024
0.9950
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50het
91.9331
99.5790
85.3775
44.4518
2129921373664
1.0929
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
33.3333
100.0000
20.0000
50.0000
10140
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
98.7189
99.8474
97.6155
43.1356
130921310320
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200*
2.5000
100.0000
1.2658
65.6522
101781
1.2821
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200het
2.8571
100.0000
1.4493
62.7027
101681
1.4706
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00010
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
79.5455
00090
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvmap_l100_m0_e0*
96.3071
96.6979
95.9195
73.9602
1071836610719456169
37.0614
gduggal-snapfbSNPtvmap_l100_m0_e0het
95.8604
97.4661
94.3068
70.6611
70391837040425163
38.3529
gduggal-snapfbSNPtvmap_l100_m0_e0hetalt
93.7500
93.7500
93.7500
91.5344
1511510
0.0000
gduggal-snapfbSNPtvmap_l100_m0_e0homalt
97.1883
95.2678
99.1879
78.6252
36641823664306
20.0000
gduggal-snapfbSNPtvmap_l100_m1_e0*
97.5300
97.9838
97.0805
69.8683
2400749424008722232
32.1330
gduggal-snapfbSNPtvmap_l100_m1_e0het
97.0635
98.4108
95.7526
68.5715
1517224515172673223
33.1352
gduggal-snapfbSNPtvmap_l100_m1_e0hetalt
93.9759
95.1220
92.8571
85.7627
3923930
0.0000
gduggal-snapfbSNPtvmap_l100_m1_e0homalt
98.3618
97.2686
99.4798
71.8035
87962478797469
19.5652
gduggal-snapfbSNPtvmap_l100_m2_e0*
97.5647
98.0226
97.1111
71.6649
2453849524539730232
31.7808
gduggal-snapfbSNPtvmap_l100_m2_e0het
97.1053
98.4471
95.7997
70.6844
1553224515532681223
32.7460
gduggal-snapfbSNPtvmap_l100_m2_e0hetalt
94.1176
95.2381
93.0233
86.3924
4024030
0.0000
gduggal-snapfbSNPtvmap_l100_m2_e0homalt
98.3869
97.3084
99.4896
73.1420
89662488967469
19.5652
gduggal-snapfbSNPtvmap_l100_m2_e1*
97.5848
98.0422
97.1318
71.7053
2478849524789732232
31.6940
gduggal-snapfbSNPtvmap_l100_m2_e1het
97.1282
98.4628
95.8293
70.7561
1569324515693683223
32.6501
gduggal-snapfbSNPtvmap_l100_m2_e1hetalt
94.2529
95.3488
93.1818
86.1635
4124130
0.0000
gduggal-snapfbSNPtvmap_l100_m2_e1homalt
98.4024
97.3339
99.4946
73.1383
90542489055469
19.5652
gduggal-snapfbSNPtvmap_l125_m0_e0*
95.3719
95.7171
95.0292
79.3444
63472846347332129
38.8554
gduggal-snapfbSNPtvmap_l125_m0_e0het
94.9693
96.7280
93.2734
75.1430
42571444257307123
40.0651
gduggal-snapfbSNPtvmap_l125_m0_e0hetalt
94.1176
88.8889
100.0000
94.7020
81800
gduggal-snapfbSNPtvmap_l125_m0_e0homalt
96.2107
93.7416
98.8135
84.7573
20821392082256
24.0000
gduggal-snapfbSNPtvmap_l125_m1_e0*
96.8139
97.2340
96.3974
74.1586
1557344315573582212
36.4261
gduggal-snapfbSNPtvmap_l125_m1_e0het
96.2891
97.8866
94.7429
72.1296
99122149912550205
37.2727
gduggal-snapfbSNPtvmap_l125_m1_e0hetalt
91.8033
93.3333
90.3226
86.9198
2822830
0.0000
gduggal-snapfbSNPtvmap_l125_m1_e0homalt
97.7782
96.1263
99.4878
77.1149
56332275633297
24.1379
gduggal-snapfbSNPtvmap_l125_m2_e0*
96.8780
97.2952
96.4644
75.8291
1604344616043588214
36.3946
gduggal-snapfbSNPtvmap_l125_m2_e0het
96.3724
97.9506
94.8442
74.2096
1022821410228556207
37.2302
gduggal-snapfbSNPtvmap_l125_m2_e0hetalt
91.8033
93.3333
90.3226
87.8431
2822830
0.0000
gduggal-snapfbSNPtvmap_l125_m2_e0homalt
97.8112
96.1775
99.5014
78.2474
57872305787297
24.1379