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Explore HG002 comparison results
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EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85301-85350 / 86044 show all
gduggal-snapplatSNPtvtech_badpromoters*
89.0511
84.7222
93.8462
77.3519
61116140
0.0000
gduggal-snapplatSNPtvtech_badpromotershet
87.8788
87.8788
87.8788
83.6634
2942940
0.0000
gduggal-snapplatSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatSNPtvtech_badpromotershomalt
90.1408
82.0513
100.0000
62.3529
3273200
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
15.1782
85.4545
8.3287
79.8084
14124151166221
1.2635
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
13.3646
83.0645
7.2669
75.3956
10321113144213
0.9015
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
75.0000
000370
0.0000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
29.0076
92.6829
17.1946
91.1987
383381838
4.3716
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.0458
95.2883
21.4714
85.0675
1355671398511385
1.6624
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
28.5443
93.7568
16.8348
81.4803
85657901445148
1.0784
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
2.8369
100.0000
1.4388
74.9550
2021373
2.1898
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
64.9197
98.0276
48.5294
92.7910
4971049552534
6.4762
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.5632
96.5217
26.4836
86.5727
1221441254348167
1.9247
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
33.9862
95.3401
20.6789
83.3507
75737792303837
1.2179
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
3.8462
100.0000
1.9608
75.9434
2021003
3.0000
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
72.4427
98.5075
57.2852
93.2156
462746034327
7.8717
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
54.3229
97.9257
37.5868
83.5805
4060864112682899
1.4499
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
46.2642
97.2779
30.3489
80.4847
2573722627602958
0.9620
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
3.6810
100.0000
1.8750
78.4657
3031573
1.9108
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
81.8789
99.0654
69.7740
90.1347
148414148264238
5.9190
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
73.1099
94.8597
59.4736
81.1920
13822749139659516255
2.6797
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.2291
94.8867
50.8665
79.7967
866646788068506164
1.9281
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
13.6364
100.0000
7.3171
82.8308
150151908
4.2105
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
90.3235
94.7999
86.2508
84.2900
5141282514482083
10.1220
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50*
73.6686
98.2908
58.9111
74.8889
47738348263366126
3.7433
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50het
67.7466
98.0570
51.7501
74.5351
3028603090288175
2.6033
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
1.9417
100.0000
0.9804
62.5000
1011012
1.9802
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
89.5049
98.6984
81.8782
76.1990
174423173538449
12.7604
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200*
4.1580
76.9231
2.1368
79.9012
206209167
0.7642
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200het
3.0730
70.5882
1.5707
75.7691
125127522
0.2660
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
64.7727
000311
3.2258
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
10.6667
88.8889
5.6738
90.0424
8181334
3.0075
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.2467
99.6334
98.8630
62.3274
10871401086912524
19.2000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.1501
99.7008
98.6054
62.2072
69982170009915
15.1515
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
83.3333
100.0000
71.4286
70.8333
50520
0.0000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.4469
99.5112
99.3827
62.5253
3868193864249
37.5000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
91.9883
99.2888
85.6879
49.6867
7399537430124143
3.4650
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
88.7788
99.0616
80.4299
50.4389
4645444677113826
2.2847