PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85201-85250 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.2213 | 71.4171 | 94.1457 | 64.2321 | 5322 | 2130 | 5339 | 332 | 30 | 9.0361 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.5706 | 70.3775 | 91.5264 | 68.8371 | 3300 | 1389 | 3316 | 307 | 18 | 5.8632 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.0660 | 73.1690 | 98.7769 | 51.5065 | 2018 | 740 | 2019 | 25 | 12 | 48.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 34.7826 | 47.6190 | 27.3973 | 95.0441 | 20 | 22 | 20 | 53 | 3 | 5.6604 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1905 | 52.7778 | 27.5362 | 94.7767 | 19 | 17 | 19 | 50 | 3 | 6.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.0000 | 16.6667 | 25.0000 | 97.2973 | 1 | 5 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.9810 | 69.4783 | 97.0481 | 57.6686 | 2397 | 1053 | 2400 | 73 | 9 | 12.3288 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0119 | 68.8026 | 95.5844 | 61.7961 | 1471 | 667 | 1472 | 68 | 5 | 7.3529 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6052 | 70.6331 | 99.4641 | 48.4530 | 926 | 385 | 928 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 92.2078 | 0 | 1 | 0 | 18 | 0 | 0.0000 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 91.2621 | 0 | 1 | 0 | 18 | 0 | 0.0000 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | * | 92.3781 | 89.7690 | 95.1434 | 82.0623 | 9950 | 1134 | 9952 | 508 | 276 | 54.3307 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | het | 92.3125 | 91.6921 | 92.9413 | 85.1008 | 6622 | 600 | 6623 | 503 | 271 | 53.8767 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | homalt | 92.5848 | 86.1934 | 100.0000 | 67.9954 | 3315 | 531 | 3316 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | * | 94.8170 | 93.1840 | 96.5083 | 77.9815 | 22831 | 1670 | 22830 | 826 | 404 | 48.9104 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | het | 94.6299 | 94.5320 | 94.7279 | 81.7875 | 14574 | 843 | 14572 | 811 | 394 | 48.5820 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | homalt | 95.2001 | 90.9101 | 99.9149 | 63.7649 | 8221 | 822 | 8222 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | * | 94.8967 | 93.3008 | 96.5482 | 79.3757 | 23356 | 1677 | 23355 | 835 | 405 | 48.5030 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | het | 94.7121 | 94.6314 | 94.7930 | 82.9183 | 14930 | 847 | 14928 | 820 | 395 | 48.1707 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | homalt | 95.2754 | 91.0462 | 99.9166 | 66.1343 | 8389 | 825 | 8390 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | * | 94.9238 | 93.3394 | 96.5629 | 79.3964 | 23599 | 1684 | 23599 | 840 | 407 | 48.4524 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | het | 94.7477 | 94.6794 | 94.8162 | 82.9388 | 15090 | 848 | 15090 | 825 | 397 | 48.1212 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | homalt | 95.2868 | 91.0664 | 99.9174 | 66.1273 | 8471 | 831 | 8471 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | * | 89.9339 | 86.5631 | 93.5778 | 86.2991 | 5740 | 891 | 5741 | 394 | 208 | 52.7919 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | het | 89.8264 | 88.7753 | 90.9027 | 88.4354 | 3907 | 494 | 3907 | 391 | 205 | 52.4297 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 90.8163 | 6 | 3 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m0_e0 | homalt | 90.2668 | 82.2602 | 100.0000 | 75.6753 | 1827 | 394 | 1828 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | * | 93.2502 | 91.0465 | 95.5633 | 81.8317 | 14582 | 1434 | 14582 | 677 | 351 | 51.8464 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | het | 93.1767 | 92.9883 | 93.3657 | 84.9692 | 9416 | 710 | 9415 | 669 | 344 | 51.4200 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | homalt | 93.4557 | 87.7304 | 99.9806 | 69.1888 | 5141 | 719 | 5142 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e0 | * | 93.3644 | 91.2184 | 95.6138 | 83.0664 | 15041 | 1448 | 15041 | 690 | 359 | 52.0290 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e0 | het | 93.2998 | 93.1527 | 93.4473 | 85.9522 | 9727 | 715 | 9726 | 682 | 352 | 51.6129 | |