PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84301-84350 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3734 | 80.4048 | 98.0952 | 76.9380 | 1748 | 426 | 1751 | 34 | 4 | 11.7647 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.7124 | 80.0288 | 97.0280 | 79.4096 | 1110 | 277 | 1110 | 34 | 4 | 11.7647 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.5292 | 81.0433 | 100.0000 | 70.5882 | 637 | 149 | 640 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.0404 | 76.1806 | 98.8320 | 80.6905 | 1097 | 343 | 1100 | 13 | 2 | 15.3846 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 85.5556 | 75.8206 | 98.1586 | 82.6237 | 693 | 221 | 693 | 13 | 2 | 15.3846 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 86.8534 | 76.7619 | 100.0000 | 76.0472 | 403 | 122 | 406 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 57.0248 | 41.8182 | 89.6104 | 97.1545 | 69 | 96 | 69 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 54.7486 | 39.5161 | 89.0909 | 97.3583 | 49 | 75 | 49 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 63.4921 | 48.7805 | 90.9091 | 96.4630 | 20 | 21 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 67.7973 | 53.7975 | 91.6468 | 94.9895 | 765 | 657 | 768 | 70 | 16 | 22.8571 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 64.8336 | 51.1501 | 88.5122 | 95.7847 | 467 | 446 | 470 | 61 | 8 | 13.1148 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.2187 | 58.7771 | 97.0684 | 92.5467 | 298 | 209 | 298 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 69.0120 | 55.2569 | 91.8848 | 94.6637 | 699 | 566 | 702 | 62 | 14 | 22.5806 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.2142 | 52.8967 | 88.4937 | 95.5535 | 420 | 374 | 423 | 55 | 7 | 12.7273 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.9073 | 59.4883 | 97.5524 | 91.9640 | 279 | 190 | 279 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.3451 | 73.4925 | 96.2484 | 91.4731 | 3047 | 1099 | 3053 | 119 | 21 | 17.6471 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 82.0159 | 72.4008 | 94.5759 | 92.8167 | 1915 | 730 | 1918 | 110 | 13 | 11.8182 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.6486 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 85.7476 | 75.5007 | 99.2126 | 87.1486 | 1131 | 367 | 1134 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.4697 | 78.9719 | 98.0167 | 90.7130 | 11507 | 3064 | 11515 | 233 | 49 | 21.0300 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.7364 | 78.3970 | 97.0612 | 92.7953 | 7160 | 1973 | 7167 | 217 | 34 | 15.6682 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 92.8571 | 86.6667 | 100.0000 | 96.9838 | 13 | 2 | 13 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.3374 | 74.7117 | 96.8102 | 79.6075 | 3628 | 1228 | 3642 | 120 | 34 | 28.3333 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 82.8907 | 73.1218 | 95.6723 | 82.2308 | 2258 | 830 | 2277 | 103 | 19 | 18.4466 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.8721 | 77.5325 | 98.7699 | 72.5739 | 1370 | 397 | 1365 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.0000 | 46.1538 | 85.7143 | 98.6805 | 12 | 14 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 43.4783 | 29.4118 | 83.3333 | 99.2780 | 5 | 12 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 96.5217 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.6186 | 84.8043 | 99.6235 | 66.5948 | 9253 | 1658 | 9262 | 35 | 13 | 37.1429 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.6939 | 85.0833 | 99.4182 | 67.5827 | 5972 | 1047 | 5981 | 35 | 13 | 37.1429 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.4701 | 84.2809 | 100.0000 | 64.5876 | 3276 | 611 | 3276 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||