PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
701-750 / 86044 show all
astatham-gatkSNP*map_l100_m1_e0*
91.9136
85.1664
99.8219
69.0267
61663107406165211052
47.2727
astatham-gatkSNP*map_l100_m1_e0het
86.7442
76.7367
99.7535
74.2815
3480710552347968633
38.3721
astatham-gatkSNP*map_l100_m1_e0hetalt
98.7654
97.5610
100.0000
69.9248
4014000
astatham-gatkSNP*map_l100_m1_e0homalt
99.6081
99.3075
99.9106
57.8259
26816187268162419
79.1667
astatham-gatkSNP*map_l100_m2_e0*
91.9897
85.2942
99.8259
70.5601
63087108776307611052
47.2727
astatham-gatkSNP*map_l100_m2_e0het
86.8923
76.9650
99.7597
75.4072
3571110688357008633
38.3721
astatham-gatkSNP*map_l100_m2_e0hetalt
98.7952
97.6190
100.0000
72.2973
4114100
astatham-gatkSNP*map_l100_m2_e0homalt
99.6137
99.3169
99.9123
60.3292
27335188273352419
79.1667
astatham-gatkSNP*map_l100_m2_e1*
92.0052
85.3219
99.8246
70.5612
63767109706375611252
46.4286
astatham-gatkSNP*map_l100_m2_e1het
86.9224
77.0139
99.7569
75.4083
3611810780361078833
37.5000
astatham-gatkSNP*map_l100_m2_e1hetalt
98.8235
97.6744
100.0000
71.8121
4214200
astatham-gatkSNP*map_l100_m2_e1homalt
99.6157
99.3200
99.9131
60.3111
27607189276072419
79.1667
astatham-gatkSNP*map_l125_m0_e0*
93.0056
87.2530
99.5702
78.3613
169142471169117329
39.7260
astatham-gatkSNP*map_l125_m0_e0het
89.5045
81.3803
99.4306
82.1625
103062358103035918
30.5085
astatham-gatkSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
75.6757
90900
astatham-gatkSNP*map_l125_m0_e0homalt
99.0469
98.3164
99.7883
67.5212
659911365991411
78.5714
astatham-gatkSNP*map_l125_m1_e0*
91.2465
84.0779
99.7513
74.8310
381107217381049543
45.2632
astatham-gatkSNP*map_l125_m1_e0het
85.6838
75.1515
99.6496
79.7424
213377055213317527
36.0000
astatham-gatkSNP*map_l125_m1_e0hetalt
98.3051
96.6667
100.0000
71.0000
2912900
astatham-gatkSNP*map_l125_m1_e0homalt
99.4624
99.0476
99.8807
63.5573
16744161167442016
80.0000
astatham-gatkSNP*map_l125_m2_e0*
91.3143
84.1877
99.7590
76.2743
393357388393299543
45.2632
astatham-gatkSNP*map_l125_m2_e0het
85.8236
75.3598
99.6616
80.7499
220947224220887527
36.0000
astatham-gatkSNP*map_l125_m2_e0hetalt
98.3051
96.6667
100.0000
75.6303
2912900
astatham-gatkSNP*map_l125_m2_e0homalt
99.4712
99.0619
99.8839
66.1554
17212163172122016
80.0000
astatham-gatkSNP*map_l125_m2_e1*
91.3125
84.1829
99.7615
76.3148
397367466397309543
45.2632
astatham-gatkSNP*map_l125_m2_e1het
85.8279
75.3644
99.6653
80.7852
223387302223327527
36.0000
astatham-gatkSNP*map_l125_m2_e1hetalt
98.3051
96.6667
100.0000
75.6303
2912900
astatham-gatkSNP*map_l125_m2_e1homalt
99.4760
99.0703
99.8850
66.1765
17369163173692016
80.0000
astatham-gatkSNP*map_l150_m0_e0*
93.4108
88.0735
99.4368
82.7630
105971435105946021
35.0000
astatham-gatkSNP*map_l150_m0_e0het
90.3676
82.9471
99.2462
85.7275
6586135465835012
24.0000
astatham-gatkSNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
89.2857
30300
astatham-gatkSNP*map_l150_m0_e0homalt
98.8775
98.0191
99.7511
73.7506
4008814008109
90.0000
astatham-gatkSNP*map_l150_m1_e0*
91.4460
84.4686
99.6799
78.7872
258554754258498339
46.9880
astatham-gatkSNP*map_l150_m1_e0het
86.2499
76.0872
99.5460
82.9944
146974619146916726
38.8060
astatham-gatkSNP*map_l150_m1_e0hetalt
97.4359
95.0000
100.0000
75.9494
1911900
astatham-gatkSNP*map_l150_m1_e0homalt
99.3312
98.8113
99.8566
68.4753
11139134111391613
81.2500
astatham-gatkSNP*map_l150_m2_e0*
91.4701
84.5033
99.6888
80.0769
269164936269108440
47.6190
astatham-gatkSNP*map_l150_m2_e0het
86.3036
76.1635
99.5583
83.9104
153344799153286827
39.7059
astatham-gatkSNP*map_l150_m2_e0hetalt
97.4359
95.0000
100.0000
79.5699
1911900
astatham-gatkSNP*map_l150_m2_e0homalt
99.3470
98.8375
99.8618
70.8404
11563136115631613
81.2500
astatham-gatkSNP*map_l150_m2_e1*
91.4615
84.4862
99.6922
80.1245
272134997272078440
47.6190
astatham-gatkSNP*map_l150_m2_e1het
86.2859
76.1332
99.5631
83.9622
155034860154976827
39.7059
astatham-gatkSNP*map_l150_m2_e1hetalt
97.4359
95.0000
100.0000
79.5699
1911900
astatham-gatkSNP*map_l150_m2_e1homalt
99.3541
98.8501
99.8633
70.8527
11691136116911613
81.2500
astatham-gatkSNP*map_l250_m0_e0*
93.8786
89.7892
98.3581
93.7904
19172181917328
25.0000
astatham-gatkSNP*map_l250_m0_e0het
92.0747
86.7862
98.0495
94.4847
13071991307263
11.5385
astatham-gatkSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
astatham-gatkSNP*map_l250_m0_e0homalt
97.9920
96.9793
99.0260
91.4528
6101961065
83.3333
astatham-gatkSNP*map_l250_m1_e0*
92.7803
87.1919
99.1341
90.2158
629792562975519
34.5455
astatham-gatkSNP*map_l250_m1_e0het
89.4949
81.7876
98.8059
91.8773
388986638894712
25.5319