PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtype SubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
601-650 / 86044 show all
astatham-gatkSNP*func_cds*
99.8621
99.7796
99.9448
24.2600
181104018107100
0.0000
astatham-gatkSNP*func_cdshet
99.7982
99.6864
99.9102
26.1346
111263511123100
0.0000
astatham-gatkSNP*func_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
astatham-gatkSNP*func_cdshomalt
99.9642
99.9284
100.0000
20.9745
69745697400
astatham-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.0488
98.3627
99.7446
66.6690
4686784686127
58.3333
astatham-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.6948
97.7785
99.6284
69.3550
2949672949116
54.5455
astatham-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6558
99.3707
99.9425
60.7763
173711173711
100.0000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4718
99.0131
99.9347
60.3688
55082549550723619
52.7778
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2511
98.5968
99.9141
62.3697
34922497349123013
43.3333
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
82.3529
1211200
astatham-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8587
99.7475
99.9702
56.3085
20148512014866
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9429
98.0986
99.8019
70.2570
44833869448338930
33.7079
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5109
97.3461
99.7039
72.1148
27950762279508324
28.9157
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
86.6071
1501500
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6662
99.3697
99.9644
66.5145
168681071686866
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2973
98.6962
99.9057
48.2245
423956423941
25.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.9667
98.0640
99.8862
50.8114
263452263430
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8445
99.7514
99.9377
43.3110
16054160511
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6839
99.4502
99.9188
54.8820
615034615050
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5662
99.2623
99.8720
56.6274
390229390250
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8889
99.7780
100.0000
51.4582
22475224700
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7288
99.5616
99.8965
59.3927
386117386140
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6384
99.4387
99.8390
60.5902
248014248040
0.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8914
99.7831
100.0000
57.0227
13803138000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.2405
95.8549
98.6667
91.1368
3701637053
60.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.8807
95.6522
98.1413
91.1948
2641226453
60.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
90.9633
106410600
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.0766
96.6507
99.5451
88.1460
26269126261211
91.6667
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.6650
96.0317
99.3548
89.1657
16947016941110
90.9091
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8310
97.7918
99.8926
85.6659
9302193011
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1132
96.6216
99.6516
87.6280
228880228888
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6447
95.8388
99.5199
88.8259
145163145177
100.0000