PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49701-49750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 25.2937 | 22.4179 | 29.0158 | 55.9542 | 471 | 1630 | 513 | 1255 | 1101 | 87.7291 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.7717 | 31.2245 | 36.7713 | 63.1405 | 153 | 337 | 246 | 423 | 326 | 77.0686 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.0735 | 0.0000 | 0.0000 | 51 | 1201 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 36.6255 | 74.3733 | 24.2948 | 50.0227 | 267 | 92 | 267 | 832 | 775 | 93.1490 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 96.7290 | 14 | 2 | 14 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 80.0000 | 100.0000 | 97.8723 | 8 | 2 | 8 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.1667 | 73.0769 | 86.3636 | 95.4825 | 19 | 7 | 19 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.4706 | 64.7059 | 82.3529 | 96.0465 | 11 | 6 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 91.2281 | 8 | 1 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 97.8495 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 97.2973 | 0 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 98.2143 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 98.4733 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 100.0000 | 95.4545 | 0 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 99.0826 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 98.2456 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 97.7099 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.2522 | 20.4082 | 29.8805 | 51.4507 | 150 | 585 | 150 | 352 | 340 | 96.5909 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 23.8908 | 17.7515 | 36.5217 | 59.5070 | 30 | 139 | 42 | 73 | 70 | 95.8904 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 2.7335 | 0.0000 | 0.0000 | 12 | 427 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.0233 | 85.0394 | 27.9070 | 48.4000 | 108 | 19 | 108 | 279 | 270 | 96.7742 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.5601 | 18.5079 | 28.8840 | 55.7171 | 129 | 568 | 132 | 325 | 240 | 73.8462 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.6972 | 43.7037 | 36.3636 | 62.9969 | 59 | 76 | 88 | 154 | 95 | 61.6883 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 5.2953 | 0.0000 | 0.0000 | 26 | 465 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 30.7692 | 61.9718 | 20.4651 | 43.1217 | 44 | 27 | 44 | 171 | 145 | 84.7953 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 92.5881 | 92.5170 | 92.6593 | 58.2176 | 680 | 55 | 669 | 53 | 51 | 96.2264 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.6885 | 100.0000 | 64.8649 | 84.2999 | 169 | 0 | 72 | 39 | 38 | 97.4359 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3540 | 87.6993 | 99.7881 | 34.6260 | 385 | 54 | 471 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.4055 | 83.0652 | 87.8815 | 45.0961 | 981 | 200 | 979 | 135 | 134 | 99.2593 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.4655 | 91.2162 | 60.1093 | 74.5125 | 135 | 13 | 110 | 73 | 72 | 98.6301 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 88.0242 | 78.7844 | 99.7191 | 26.2176 | 687 | 185 | 710 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.6842 | 98.7578 | 72.6027 | 36.7052 | 159 | 2 | 159 | 60 | 60 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.3559 | 88.8889 | 75.0000 | 96.7742 | 24 | 3 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3320 | 62.0112 | 99.2537 | 24.2938 | 111 | 68 | 133 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1817 | 76.4706 | 88.8147 | 52.8718 | 533 | 164 | 532 | 67 | 66 | 98.5075 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |