PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49651-49700 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 68.2281 | 0.0000 | 0.0000 | 335 | 156 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.2609 | 88.7324 | 70.0000 | 29.1339 | 63 | 8 | 63 | 27 | 27 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0645 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 97.6378 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.1338 | 86.8027 | 91.5935 | 49.4610 | 638 | 97 | 730 | 67 | 66 | 98.5075 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 92.0685 | 92.3077 | 91.8306 | 51.3613 | 156 | 13 | 607 | 54 | 54 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 81.7768 | 0.0000 | 0.0000 | 359 | 80 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 93.5361 | 96.8504 | 90.4412 | 37.6147 | 123 | 4 | 123 | 13 | 12 | 92.3077 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.5778 | 77.1739 | 98.5915 | 60.3352 | 71 | 21 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.4891 | 88.8889 | 98.5915 | 57.4850 | 8 | 1 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 75.9036 | 0.0000 | 0.0000 | 63 | 20 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.6460 | 66.5049 | 99.2593 | 44.6721 | 137 | 69 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 89.4961 | 81.4815 | 99.2593 | 43.5146 | 22 | 5 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 64.2458 | 0.0000 | 0.0000 | 115 | 64 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.0581 | 82.1038 | 84.0349 | 57.1491 | 1725 | 376 | 1637 | 311 | 307 | 98.7138 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.9474 | 92.0408 | 82.3881 | 83.0380 | 451 | 39 | 276 | 59 | 57 | 96.6102 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.5547 | 73.4026 | 99.7027 | 31.1263 | 919 | 333 | 1006 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 73.7279 | 98.8858 | 58.7748 | 45.3888 | 355 | 4 | 355 | 249 | 247 | 99.1968 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.4034 | 18.2049 | 29.1188 | 44.6643 | 215 | 966 | 228 | 555 | 520 | 93.6937 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.4599 | 40.5405 | 38.4354 | 56.0538 | 60 | 88 | 113 | 181 | 161 | 88.9503 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.5872 | 0.0000 | 0.0000 | 40 | 832 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.3846 | 71.4286 | 23.5174 | 34.4504 | 115 | 46 | 115 | 374 | 359 | 95.9893 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 2.1739 | 100.0000 | 2 | 90 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.1111 | 100.0000 | 1 | 8 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 1.2048 | 0.0000 | 0.0000 | 1 | 82 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 94.4444 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 3.3784 | 2.4272 | 5.5556 | 80.2198 | 5 | 201 | 1 | 17 | 1 | 5.8824 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 8.0000 | 11.1111 | 6.2500 | 76.8116 | 3 | 24 | 1 | 15 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 1.1173 | 0.0000 | 0.0000 | 2 | 177 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 15.2009 | 76.9231 | 8.4337 | 82.7562 | 20 | 6 | 21 | 228 | 4 | 1.7544 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.7249 | 76.4706 | 6.3492 | 79.5676 | 13 | 4 | 12 | 177 | 2 | 1.1299 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 25.1497 | 77.7778 | 15.0000 | 88.4393 | 7 | 2 | 9 | 51 | 2 | 3.9216 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 16.6796 | 78.5714 | 9.3301 | 83.9601 | 33 | 9 | 39 | 379 | 6 | 1.5831 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.4943 | 74.0741 | 6.2305 | 81.1065 | 20 | 7 | 20 | 301 | 3 | 0.9967 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 31.9534 | 86.6667 | 19.5876 | 89.3054 | 13 | 2 | 19 | 78 | 3 | 3.8462 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.7350 | 81.2500 | 10.5882 | 85.7263 | 13 | 3 | 18 | 152 | 2 | 1.3158 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.0781 | 70.0000 | 6.0150 | 83.1858 | 7 | 3 | 8 | 125 | 1 | 0.8000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.5532 | 100.0000 | 27.0270 | 90.7500 | 6 | 0 | 10 | 27 | 1 | 3.7037 | |