PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49501-49550 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.3234 | 76.6990 | 98.7097 | 39.9225 | 158 | 48 | 153 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.1064 | 74.0741 | 100.0000 | 88.3721 | 20 | 7 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5570 | 77.0950 | 98.6667 | 27.5362 | 138 | 41 | 148 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.1064 | 76.9231 | 95.2381 | 94.1989 | 20 | 6 | 20 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.6667 | 76.4706 | 100.0000 | 95.1493 | 13 | 4 | 13 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 91.4894 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 52.8000 | 35.8696 | 100.0000 | 62.5000 | 33 | 59 | 33 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.5556 | 100.0000 | 5 | 4 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 50.4505 | 33.7349 | 100.0000 | 36.5385 | 28 | 55 | 33 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 65.7143 | 54.7619 | 82.1429 | 95.6923 | 23 | 19 | 23 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.7778 | 48.1481 | 72.2222 | 96.3710 | 13 | 14 | 13 | 5 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.0000 | 50.0000 | 88.8889 | 96.9697 | 8 | 8 | 8 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.8571 | 30.0000 | 75.0000 | 98.2143 | 3 | 7 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.9355 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.9365 | 51.9417 | 98.1651 | 46.0396 | 107 | 99 | 107 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5000 | 77.7778 | 100.0000 | 95.7447 | 21 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.5069 | 48.0447 | 98.1308 | 30.0654 | 86 | 93 | 105 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 57.6923 | 78.9474 | 94.6176 | 15 | 11 | 15 | 4 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.5161 | 58.8235 | 71.4286 | 94.8529 | 10 | 7 | 10 | 4 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 71.4286 | 55.5556 | 100.0000 | 92.8571 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.9526 | 84.9119 | 87.0190 | 57.3989 | 1784 | 317 | 1696 | 253 | 247 | 97.6285 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0651 | 92.4490 | 67.5545 | 80.7459 | 453 | 37 | 279 | 134 | 129 | 96.2687 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.5183 | 78.0351 | 99.6251 | 29.7101 | 977 | 275 | 1063 | 4 | 4 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5746 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.9512 | 25 | 1 | 25 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.4400 | 16 | 1 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3368 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 93.5484 | 2 | 2 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 77.7778 | 1 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.0731 | 66.0194 | 98.5612 | 58.3832 | 136 | 70 | 137 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.8729 | 92.5926 | 75.0000 | 96.8504 | 25 | 2 | 3 | 1 | 0 | 0.0000 | |