PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4901-4950 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | segdup | * | 85.8304 | 80.5714 | 91.8239 | 87.1255 | 141 | 34 | 146 | 13 | 13 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | het | 88.9311 | 86.7470 | 91.2281 | 85.7500 | 72 | 11 | 104 | 10 | 10 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | hetalt | 82.7740 | 82.2222 | 83.3333 | 86.0465 | 37 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | homalt | 80.0000 | 68.0851 | 96.9697 | 90.5444 | 32 | 15 | 32 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 58 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 37 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D6_15 | segdup | * | 84.6900 | 76.4398 | 94.9367 | 90.2107 | 146 | 45 | 150 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | het | 82.4566 | 71.7391 | 96.9388 | 89.5075 | 66 | 26 | 95 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | hetalt | 81.9277 | 69.3878 | 100.0000 | 90.0000 | 34 | 15 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | segdup | homalt | 91.1852 | 92.0000 | 90.3846 | 91.3333 | 46 | 4 | 47 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 47 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | segdup | * | 95.1081 | 96.7894 | 93.4842 | 94.5833 | 1025 | 34 | 1033 | 72 | 18 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | het | 93.6061 | 96.2825 | 91.0744 | 94.8537 | 518 | 20 | 551 | 54 | 10 | 18.5185 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | hetalt | 87.9440 | 89.5833 | 86.3636 | 97.6471 | 43 | 5 | 19 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | homalt | 97.4757 | 98.0973 | 96.8619 | 93.7995 | 464 | 9 | 463 | 15 | 7 | 46.6667 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | * | 97.3404 | 97.4615 | 97.2197 | 94.7311 | 1075 | 28 | 1084 | 31 | 5 | 16.1290 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | het | 97.2186 | 97.8324 | 96.6125 | 94.2604 | 677 | 15 | 713 | 25 | 3 | 12.0000 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | hetalt | 90.5263 | 82.6923 | 100.0000 | 98.1308 | 43 | 9 | 14 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdup | homalt | 98.6157 | 98.8858 | 98.3471 | 95.1952 | 355 | 4 | 357 | 6 | 2 | 33.3333 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | het | 75.8621 | 91.6667 | 64.7059 | 95.7500 | 22 | 2 | 22 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | segdup | homalt | 88.2353 | 78.9474 | 100.0000 | 86.8421 | 15 | 4 | 15 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | segdup | * | 92.2615 | 90.9348 | 93.6275 | 94.8607 | 963 | 96 | 955 | 65 | 56 | 86.1538 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | het | 92.9009 | 96.6543 | 89.4281 | 96.3152 | 520 | 18 | 516 | 61 | 52 | 85.2459 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | segdup | homalt | 96.3005 | 93.6575 | 99.0971 | 89.4222 | 443 | 30 | 439 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | * | 68.8950 | 65.9686 | 72.0930 | 94.5707 | 126 | 65 | 124 | 48 | 48 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | het | 77.0066 | 95.6522 | 64.4444 | 95.1837 | 88 | 4 | 87 | 48 | 48 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | segdup | homalt | 85.0575 | 74.0000 | 100.0000 | 89.8630 | 37 | 13 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 68.0000 | 99.2789 | 0 | 0 | 17 | 8 | 3 | 37.5000 | |
| gduggal-bwavard | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 61.9048 | 99.3151 | 0 | 0 | 13 | 8 | 3 | 37.5000 | |
| gduggal-bwavard | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 99.0025 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | segdup | * | 79.8443 | 81.0345 | 78.6885 | 95.9816 | 47 | 11 | 48 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | het | 84.0644 | 97.2973 | 74.0000 | 96.3530 | 36 | 1 | 37 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | segdup | homalt | 95.6522 | 91.6667 | 100.0000 | 92.5170 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | het | 93.9882 | 98.5549 | 89.8260 | 96.1006 | 682 | 10 | 671 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdup | homalt | 95.4876 | 91.3649 | 100.0000 | 92.3834 | 328 | 31 | 325 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 50.0000 | 98.9150 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 50.0000 | 98.7928 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |