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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 92 93 94 95 96 97 98 99 100 ... 1720 1721 » 4751-4800 / 86044 show all
ckim-isaac	INDEL	I16_PLUS	segdup	*	85.7143	76.5957	97.2973	90.5852	36	11	36	1	0	0.0000
ckim-isaac	INDEL	I16_PLUS	segdup	het	78.0488	66.6667	94.1176	92.7039	16	8	16	1	0	0.0000
ckim-isaac	INDEL	I16_PLUS	segdup	hetalt	85.7143	75.0000	100.0000	95.5882	3	1	3	0	0
ckim-isaac	INDEL	I16_PLUS	segdup	homalt	94.4444	89.4737	100.0000	81.5217	17	2	17	0	0
ckim-isaac	INDEL	I6_15	segdup	*	91.8429	86.8571	97.4359	90.7253	152	23	152	4	3	75.0000
ckim-isaac	INDEL	I6_15	segdup	het	93.9024	92.7711	95.0617	92.3368	77	6	77	4	3	75.0000
ckim-isaac	INDEL	I6_15	segdup	hetalt	91.5663	84.4444	100.0000	88.0126	38	7	38	0	0
ckim-isaac	INDEL	I6_15	segdup	homalt	88.0952	78.7234	100.0000	87.9870	37	10	37	0	0
ckim-isaac	SNP	*	segdup	*	98.2480	96.6046	99.9484	87.4705	27114	953	27116	14	7	50.0000
ckim-isaac	SNP	*	segdup	het	98.3305	96.7604	99.9523	88.4697	16756	561	16758	8	1	12.5000
ckim-isaac	SNP	*	segdup	hetalt	100.0000	100.0000	100.0000	93.8053	7	0	7	0	0
ckim-isaac	SNP	*	segdup	homalt	98.1370	96.3511	99.9903	85.3967	10351	392	10351	1	1	100.0000
ckim-isaac	INDEL	I1_5	segdup	*	97.2169	95.6563	98.8293	93.2182	1013	46	1013	12	8	66.6667
ckim-isaac	INDEL	I1_5	segdup	het	97.7612	97.3978	98.1273	94.4800	524	14	524	10	6	60.0000
ckim-isaac	INDEL	I1_5	segdup	hetalt	92.1348	85.4167	100.0000	94.7165	41	7	41	0	0
ckim-isaac	INDEL	I1_5	segdup	homalt	97.0748	94.7146	99.5556	90.3516	448	25	448	2	2	100.0000
dgrover-gatk	INDEL	C1_5	segdup	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	segdup	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C1_5	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	segdup	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	segdup	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C6_15	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	segdup	*		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	segdup	het		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
dgrover-gatk	INDEL	C16_PLUS	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	89.5377	43	2	43	0	0
ckim-vqsr	INDEL	I6_15	segdup	homalt	100.0000	100.0000	100.0000	92.5750	47	0	47	0	0
ckim-vqsr	SNP	*	segdup	*	98.8099	98.0689	99.5622	93.7251	27525	542	27519	121	12	9.9174
ckim-vqsr	SNP	*	segdup	het	98.9505	98.5621	99.3421	95.0542	17068	249	17062	113	4	3.5398
ckim-vqsr	SNP	*	segdup	hetalt	92.3077	85.7143	100.0000	98.6239	6	1	6	0	0
ckim-vqsr	SNP	*	segdup	homalt	98.5850	97.2820	99.9235	88.7282	10451	292	10451	8	8	100.0000
ckim-vqsr	SNP	tv	segdup	*	98.8248	98.0778	99.5833	94.7773	8368	164	8364	35	5	14.2857
ckim-vqsr	SNP	tv	segdup	het	98.9929	98.5625	99.4272	95.9257	5211	76	5207	30	0	0.0000
ckim-vqsr	SNP	tv	segdup	hetalt	92.3077	85.7143	100.0000	98.6239	6	1	6	0	0
ckim-vqsr	SNP	tv	segdup	homalt	98.5612	97.3132	99.8416	90.0895	3151	87	3151	5	5	100.0000
dgrover-gatk	INDEL	*	segdup	*	99.0625	99.1784	98.9470	94.7737	2535	21	2537	27	10	37.0370
dgrover-gatk	INDEL	*	segdup	het	99.0133	99.2497	98.7780	95.2951	1455	11	1455	18	2	11.1111
dgrover-gatk	INDEL	*	segdup	hetalt	96.8254	93.8462	100.0000	94.7679	122	8	124	0	0
dgrover-gatk	INDEL	*	segdup	homalt	99.4292	99.7917	99.0693	93.7134	958	2	958	9	8	88.8889
ckim-vqsr	SNP	ti	segdup	*	98.8035	98.0652	99.5531	93.1259	19159	378	19157	86	7	8.1395
ckim-vqsr	SNP	ti	segdup	het	98.9319	98.5619	99.3047	94.5420	11857	173	11855	83	4	4.8193
ckim-vqsr	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	99.2453	2	0	2	0	0
ckim-vqsr	SNP	ti	segdup	homalt	98.5954	97.2685	99.9589	88.0169	7300	205	7300	3	3	100.0000
dgrover-gatk	SNP	*	segdup	*	99.6727	99.8397	99.5063	90.5121	28022	45	28016	139	12	8.6331
dgrover-gatk	SNP	*	segdup	het	99.5334	99.8152	99.2533	91.5277	17285	32	17279	130	3	2.3077
dgrover-gatk	SNP	*	segdup	hetalt	100.0000	100.0000	100.0000	96.8750	7	0	7	0	0
dgrover-gatk	SNP	*	segdup	homalt	99.8976	99.8790	99.9162	88.2042	10730	13	10730	9	9	100.0000

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