PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47751-47800 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 37 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3367 | 78.3784 | 93.6508 | 78.1250 | 58 | 16 | 59 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 69.3125 | 68.9655 | 69.6629 | 88.8471 | 60 | 27 | 62 | 27 | 20 | 74.0741 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 76.2389 | 92.3077 | 64.9351 | 86.6087 | 48 | 4 | 50 | 27 | 20 | 74.0741 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 68.5714 | 52.1739 | 100.0000 | 94.6188 | 12 | 11 | 12 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4342 | 95.8599 | 97.0154 | 57.1729 | 27090 | 1170 | 27077 | 833 | 772 | 92.6771 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.4564 | 98.1618 | 96.7610 | 58.8376 | 16127 | 302 | 16132 | 540 | 515 | 95.3704 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.7477 | 0.0000 | 0.0000 | 4 | 531 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2043 | 97.0166 | 97.3928 | 54.4393 | 10959 | 337 | 10945 | 293 | 257 | 87.7133 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0355 | 98.4951 | 99.5819 | 70.6787 | 2618 | 40 | 2620 | 11 | 3 | 27.2727 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5638 | 99.6361 | 99.4916 | 74.0824 | 1369 | 5 | 1370 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.9805 | 88.9241 | 99.6466 | 70.0529 | 281 | 35 | 282 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 64.2357 | 968 | 0 | 968 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0619 | 99.2481 | 98.8764 | 82.8296 | 264 | 2 | 264 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3590 | 100.0000 | 98.7261 | 85.0476 | 155 | 0 | 155 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 61.2903 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0388 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 88.5496 | 15 | 0 | 15 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.7198 | 89.2857 | 96.4286 | 59.4203 | 25 | 3 | 27 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 89.4737 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7960 | 99.6623 | 99.9299 | 57.3191 | 17119 | 58 | 17115 | 12 | 5 | 41.6667 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8239 | 99.7293 | 99.9186 | 58.6595 | 11054 | 30 | 11050 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7449 | 99.5401 | 99.9505 | 54.6217 | 6060 | 28 | 6060 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7764 | 99.6650 | 99.8881 | 47.1210 | 6247 | 21 | 6247 | 7 | 3 | 42.8571 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7660 | 99.6556 | 99.8767 | 49.4516 | 4051 | 14 | 4051 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1191 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8072 | 99.6609 | 99.9540 | 61.5860 | 10874 | 37 | 10870 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8574 | 99.7720 | 99.9429 | 62.6048 | 7003 | 16 | 6999 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7163 | 99.4597 | 99.9741 | 59.5798 | 3866 | 21 | 3866 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3734 | 97.4194 | 99.3464 | 82.9050 | 151 | 4 | 152 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 86.9198 | 61 | 1 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.3488 | 93.1818 | 97.6190 | 73.0769 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5094 | 49 | 0 | 49 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7868 | 99.6845 | 99.8894 | 55.8752 | 25279 | 80 | 25282 | 28 | 15 | 53.5714 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8103 | 99.7360 | 99.8847 | 56.3092 | 14731 | 39 | 14733 | 17 | 4 | 23.5294 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0580 | 91.2409 | 99.2084 | 70.4829 | 375 | 36 | 376 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9361 | 99.9509 | 99.9214 | 54.3780 | 10173 | 5 | 10173 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4163 | 99.1347 | 99.6996 | 67.2044 | 2635 | 23 | 2655 | 8 | 4 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4887 | 99.3450 | 99.6329 | 63.1294 | 1365 | 9 | 1357 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2886 | 97.4684 | 99.1228 | 83.5498 | 308 | 8 | 339 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6891 | 99.3802 | 100.0000 | 59.1393 | 962 | 6 | 959 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8244 | 99.7128 | 99.9361 | 40.9541 | 6250 | 18 | 6259 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7907 | 99.6802 | 99.9015 | 41.5683 | 4052 | 13 | 4057 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.7728 | 100.0000 | 39.6930 | 2196 | 5 | 2200 | 0 | 0 | ||