PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4701-4750 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 80.0000 | 98.4127 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.2248 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6111 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 66.6667 | 97.3684 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | * | 97.7335 | 97.7335 | 97.7335 | 94.3200 | 1078 | 25 | 1078 | 25 | 22 | 88.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | het | 98.1532 | 99.7110 | 96.6434 | 93.9982 | 690 | 2 | 691 | 24 | 21 | 87.5000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | hetalt | 72.2591 | 57.6923 | 96.6667 | 96.9168 | 30 | 22 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 94.5201 | 358 | 1 | 358 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | segdup | * | 91.4691 | 86.9110 | 96.5318 | 93.2842 | 166 | 25 | 167 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | segdup | het | 94.7244 | 95.6522 | 93.8144 | 94.1033 | 88 | 4 | 91 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | segdup | hetalt | 72.7273 | 57.1429 | 100.0000 | 90.1141 | 28 | 21 | 26 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.5150 | 50 | 0 | 50 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 92.7785 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 92.4908 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | segdup | hetalt | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.7500 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | segdup | * | 99.6606 | 99.8359 | 99.4859 | 91.6354 | 8518 | 14 | 8514 | 44 | 6 | 13.6364 | |
| dgrover-gatk | SNP | tv | segdup | het | 99.5280 | 99.7730 | 99.2842 | 92.5335 | 5275 | 12 | 5271 | 38 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | segdup | homalt | 99.8765 | 99.9382 | 99.8149 | 89.5365 | 3236 | 2 | 3236 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | C1_5 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C1_5 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C6_15 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | C6_15 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | * | segdup | * | 97.9435 | 97.7700 | 98.1176 | 98.6833 | 2499 | 57 | 2502 | 48 | 36 | 75.0000 | |
| egarrison-hhga | INDEL | * | segdup | het | 97.9069 | 98.6357 | 97.1888 | 94.2947 | 1446 | 20 | 1452 | 42 | 30 | 71.4286 | |
| egarrison-hhga | INDEL | * | segdup | hetalt | 85.5777 | 75.3846 | 98.9583 | 95.4264 | 98 | 32 | 95 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | segdup | homalt | 99.4792 | 99.4792 | 99.4792 | 93.5414 | 955 | 5 | 955 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | tv | segdup | * | 97.9382 | 96.0384 | 99.9147 | 88.7225 | 8194 | 338 | 8196 | 7 | 4 | 57.1429 | |
| ckim-isaac | SNP | tv | segdup | het | 98.0147 | 96.1793 | 99.9214 | 89.5689 | 5085 | 202 | 5087 | 4 | 1 | 25.0000 | |
| ckim-isaac | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | tv | segdup | homalt | 97.8395 | 95.7999 | 99.9678 | 86.9397 | 3102 | 136 | 3102 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | * | segdup | * | 98.6516 | 98.7089 | 98.5943 | 95.8809 | 2523 | 33 | 2525 | 36 | 10 | 27.7778 | |
| ckim-vqsr | INDEL | * | segdup | het | 98.4343 | 98.6357 | 98.2337 | 96.7022 | 1446 | 20 | 1446 | 26 | 1 | 3.8462 | |
| ckim-vqsr | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6950 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | ti | segdup | * | 98.3830 | 96.8521 | 99.9630 | 86.8421 | 18922 | 615 | 18922 | 7 | 3 | 42.8571 | |
| ckim-isaac | SNP | ti | segdup | het | 98.4687 | 97.0158 | 99.9657 | 87.9143 | 11671 | 359 | 11671 | 4 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | segdup | homalt | 98.2649 | 96.5889 | 100.0000 | 84.6188 | 7249 | 256 | 7249 | 0 | 0 | ||