PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47351-47400 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 24.5742 | 0.0000 | 0.0000 | 101 | 310 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.3849 | 98.2708 | 96.5148 | 54.3311 | 10002 | 176 | 9831 | 355 | 280 | 78.8732 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4268 | 75.9398 | 85.4772 | 80.3586 | 202 | 64 | 206 | 35 | 25 | 71.4286 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.2814 | 84.5161 | 86.0606 | 80.3571 | 131 | 24 | 142 | 23 | 16 | 69.5652 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 21.6216 | 0.0000 | 0.0000 | 8 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 84.6703 | 85.1351 | 84.2105 | 80.3618 | 63 | 11 | 64 | 12 | 9 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 24.1692 | 17.0213 | 41.6667 | 74.4681 | 8 | 39 | 5 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 12.5000 | 6.6667 | 100.0000 | 94.1176 | 1 | 14 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 10.7143 | 0.0000 | 0.0000 | 3 | 25 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 53.3333 | 100.0000 | 36.3636 | 63.3333 | 4 | 0 | 4 | 7 | 7 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7528 | 100.0000 | 95.6044 | 84.1463 | 87 | 0 | 87 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 86.7188 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.5161 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.1405 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.2105 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 60.6383 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0823 | 74 | 0 | 74 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4229 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 88.7097 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.5254 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5855 | 99.3980 | 99.7736 | 69.6866 | 2642 | 16 | 2644 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7450 | 99.6361 | 99.8542 | 72.0228 | 1369 | 5 | 1370 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.0713 | 96.5190 | 99.6743 | 72.7111 | 305 | 11 | 306 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 64.2094 | 968 | 0 | 968 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8817 | 99.8462 | 99.9171 | 55.0271 | 25320 | 39 | 25323 | 21 | 16 | 76.1905 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8950 | 99.8510 | 99.9390 | 54.8240 | 14748 | 22 | 14750 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.0305 | 96.8370 | 99.2537 | 71.0999 | 398 | 13 | 399 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9362 | 99.9607 | 99.9116 | 54.3220 | 10174 | 4 | 10174 | 9 | 9 | 100.0000 | |
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9129 | 99.8992 | 99.9266 | 60.1913 | 10900 | 11 | 10896 | 8 | 5 | 62.5000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9002 | 99.8860 | 99.9144 | 60.6431 | 7011 | 8 | 7007 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9357 | 99.9228 | 99.9485 | 59.3344 | 3884 | 3 | 3884 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9156 | 99.9069 | 99.9243 | 55.5895 | 17161 | 16 | 17157 | 13 | 8 | 61.5385 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9052 | 99.8917 | 99.9188 | 56.2157 | 11072 | 12 | 11068 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9343 | 99.9343 | 99.9343 | 54.3868 | 6084 | 4 | 6084 | 4 | 4 | 100.0000 | |