PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47151-47200 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.5634 | 26 | 2 | 28 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 81.9477 | 151 | 4 | 152 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 85.2300 | 60 | 2 | 61 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6744 | 95.4545 | 100.0000 | 75.4386 | 42 | 2 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0078 | 49 | 0 | 49 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 100.0000 | 100.0000 | 100.0000 | 81.4499 | 87 | 0 | 87 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 100.0000 | 100.0000 | 100.0000 | 84.0532 | 52 | 0 | 48 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.7568 | 12 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.4427 | 23 | 0 | 23 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8513 | 99.7206 | 99.9825 | 55.1444 | 17129 | 48 | 17126 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7876 | 99.5850 | 99.9909 | 55.4353 | 11038 | 46 | 11035 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9671 | 99.9671 | 99.9671 | 54.5909 | 6086 | 2 | 6086 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8722 | 99.7607 | 99.9840 | 43.9807 | 6253 | 15 | 6253 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8398 | 99.6802 | 100.0000 | 44.8107 | 4052 | 13 | 4052 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9318 | 99.9091 | 99.9545 | 42.3026 | 2199 | 2 | 2199 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7095 | 99.5789 | 99.8404 | 58.9584 | 28141 | 119 | 28144 | 45 | 19 | 42.2222 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7777 | 99.7261 | 99.8294 | 60.1055 | 16384 | 45 | 16383 | 28 | 4 | 14.2857 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.7395 | 87.1028 | 99.1561 | 70.9914 | 466 | 69 | 470 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9557 | 99.8850 | 56.3788 | 11291 | 5 | 11291 | 13 | 12 | 92.3077 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8803 | 99.8245 | 99.9361 | 43.9129 | 6257 | 11 | 6257 | 4 | 3 | 75.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8769 | 99.7786 | 99.9754 | 44.9525 | 4056 | 9 | 4056 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8864 | 99.9091 | 99.8638 | 41.8076 | 2199 | 2 | 2199 | 3 | 2 | 66.6667 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8303 | 99.7434 | 99.9174 | 59.7828 | 10883 | 28 | 10881 | 9 | 5 | 55.5556 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7789 | 99.6438 | 99.9143 | 60.0480 | 6994 | 25 | 6992 | 6 | 3 | 50.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9228 | 99.9228 | 99.9228 | 59.2856 | 3884 | 3 | 3884 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8636 | 100.0000 | 97.7528 | 84.9916 | 87 | 0 | 87 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 87.7451 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.5638 | 23 | 0 | 23 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8485 | 99.7730 | 99.9242 | 55.1449 | 17138 | 39 | 17136 | 13 | 8 | 61.5385 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8148 | 99.6933 | 99.9367 | 55.5774 | 11050 | 34 | 11048 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9097 | 99.9179 | 99.9015 | 54.3245 | 6083 | 5 | 6083 | 6 | 4 | 66.6667 | |