PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4651-4700 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | segdup | * | 99.6343 | 99.7134 | 99.5554 | 88.9440 | 19481 | 56 | 19481 | 87 | 25 | 28.7356 | |
| egarrison-hhga | SNP | ti | segdup | het | 99.5306 | 99.5927 | 99.4687 | 89.2156 | 11981 | 49 | 11981 | 64 | 2 | 3.1250 | |
| egarrison-hhga | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1189 | 2 | 0 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | segdup | homalt | 99.8003 | 99.9067 | 99.6942 | 88.4424 | 7498 | 7 | 7498 | 23 | 23 | 100.0000 | |
| egarrison-hhga | SNP | tv | segdup | * | 99.5315 | 99.6015 | 99.4616 | 90.4428 | 8498 | 34 | 8498 | 46 | 15 | 32.6087 | |
| egarrison-hhga | SNP | tv | segdup | het | 99.4044 | 99.4326 | 99.3762 | 90.4305 | 5257 | 30 | 5257 | 33 | 2 | 6.0606 | |
| egarrison-hhga | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | segdup | homalt | 99.7379 | 99.8765 | 99.5996 | 90.3915 | 3234 | 4 | 3234 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | * | 95.7890 | 95.7447 | 95.8333 | 93.4426 | 45 | 2 | 46 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3451 | 4 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 90.6736 | 18 | 1 | 18 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | * | 98.8439 | 97.7143 | 100.0000 | 91.5010 | 171 | 4 | 171 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.1830 | 82 | 1 | 82 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.4773 | 45 | 2 | 45 | 0 | 0 | ||
| egarrison-hhga | SNP | * | segdup | * | 99.6030 | 99.6793 | 99.5269 | 89.4388 | 27977 | 90 | 27977 | 133 | 40 | 30.0752 | |
| egarrison-hhga | SNP | * | segdup | het | 99.4921 | 99.5438 | 99.4404 | 89.6178 | 17238 | 79 | 17238 | 97 | 4 | 4.1237 | |
| egarrison-hhga | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8528 | 7 | 0 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | segdup | homalt | 99.7815 | 99.8976 | 99.6657 | 89.1087 | 10732 | 11 | 10732 | 36 | 36 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | * | 98.8191 | 98.7724 | 98.8658 | 94.3109 | 1046 | 13 | 1046 | 12 | 6 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | het | 98.2247 | 97.7695 | 98.6842 | 94.9835 | 526 | 12 | 525 | 7 | 1 | 14.2857 | |
| egarrison-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.0412 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | homalt | 99.4731 | 99.7886 | 99.1597 | 92.9261 | 472 | 1 | 472 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | * | 64.1368 | 51.0638 | 86.2069 | 84.3243 | 24 | 23 | 25 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | het | 53.1401 | 41.6667 | 73.3333 | 84.5361 | 10 | 14 | 11 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | segdup | homalt | 81.2500 | 68.4211 | 100.0000 | 81.1594 | 13 | 6 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | segdup | * | 95.8185 | 94.8064 | 96.8525 | 93.2732 | 1004 | 55 | 1077 | 35 | 29 | 82.8571 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | het | 97.0200 | 96.4684 | 97.5779 | 93.5180 | 519 | 19 | 564 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | homalt | 97.3667 | 98.3087 | 96.4427 | 92.5159 | 465 | 8 | 488 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | * | 76.3001 | 73.2984 | 79.5580 | 91.7314 | 140 | 51 | 144 | 37 | 36 | 97.2973 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | hetalt | 44.4444 | 28.5714 | 100.0000 | 93.0147 | 14 | 35 | 19 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | segdup | homalt | 71.4286 | 90.0000 | 59.2105 | 90.9524 | 45 | 5 | 45 | 31 | 30 | 96.7742 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 95.6522 | 99.0488 | 0 | 0 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.2437 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 75.0000 | 99.0888 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.7326 | 0 | 0 | 10 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | segdup | * | 67.1246 | 62.0690 | 73.0769 | 90.0192 | 36 | 22 | 38 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | het | 81.3293 | 81.0811 | 81.5789 | 88.3436 | 30 | 7 | 31 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.0000 | 1 | 8 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | segdup | homalt | 43.7956 | 41.6667 | 46.1538 | 91.0345 | 5 | 7 | 6 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | * | 97.2740 | 96.8268 | 97.7253 | 93.8542 | 1068 | 35 | 1117 | 26 | 21 | 80.7692 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | het | 99.2846 | 99.1329 | 99.4366 | 93.3025 | 686 | 6 | 706 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | hetalt | 60.7686 | 44.2308 | 97.0588 | 96.6403 | 23 | 29 | 33 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | homalt | 97.2973 | 100.0000 | 94.7368 | 94.2878 | 359 | 0 | 378 | 21 | 20 | 95.2381 | |