PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46551-46600 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 76.3636 | 91.3043 | 65.6250 | 76.2963 | 21 | 2 | 21 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.6865 | 93.7182 | 91.6773 | 55.0764 | 23766 | 1593 | 23694 | 2151 | 1318 | 61.2738 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.4760 | 95.9242 | 91.1498 | 55.7793 | 14168 | 602 | 14151 | 1374 | 617 | 44.9054 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 5.5961 | 0.0000 | 0.0000 | 23 | 388 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.2663 | 94.0755 | 92.4709 | 53.9758 | 9575 | 603 | 9543 | 777 | 701 | 90.2188 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 98.7179 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8504 | 99.8290 | 99.8718 | 59.4899 | 7007 | 12 | 7011 | 9 | 6 | 66.6667 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9485 | 99.9228 | 99.9742 | 56.3906 | 3884 | 3 | 3875 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.5338 | 92.8273 | 90.2759 | 58.4295 | 26233 | 2027 | 26180 | 2820 | 1567 | 55.5674 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4417 | 95.1488 | 89.8844 | 58.8124 | 15632 | 797 | 15630 | 1759 | 720 | 40.9323 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 5.4206 | 0.0000 | 0.0000 | 29 | 506 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.2062 | 93.5907 | 90.8621 | 57.8426 | 10572 | 724 | 10550 | 1061 | 847 | 79.8303 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8565 | 99.9202 | 99.7929 | 46.2638 | 6263 | 5 | 6265 | 13 | 5 | 38.4615 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8403 | 99.9262 | 99.7545 | 48.2662 | 4062 | 3 | 4063 | 10 | 2 | 20.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8865 | 99.9091 | 99.8638 | 42.0263 | 2199 | 2 | 2200 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8953 | 99.9243 | 99.8662 | 56.6428 | 17164 | 13 | 17169 | 23 | 7 | 30.4348 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8692 | 99.9098 | 99.8288 | 57.6963 | 11074 | 10 | 11076 | 19 | 3 | 15.7895 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9425 | 99.9507 | 99.9343 | 54.5644 | 6085 | 3 | 6088 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9175 | 99.9267 | 99.9084 | 60.9850 | 10903 | 8 | 10906 | 10 | 2 | 20.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8860 | 99.9003 | 99.8718 | 61.7413 | 7012 | 7 | 7013 | 9 | 1 | 11.1111 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9743 | 99.9743 | 99.9743 | 59.5233 | 3886 | 1 | 3888 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7343 | 99.6285 | 99.8404 | 58.9273 | 28155 | 105 | 28158 | 45 | 20 | 44.4444 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8174 | 99.8052 | 99.8295 | 60.0496 | 16397 | 32 | 16396 | 28 | 4 | 14.2857 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8310 | 87.1028 | 99.3658 | 71.0526 | 466 | 69 | 470 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9204 | 99.9646 | 99.8762 | 56.3829 | 11292 | 4 | 11292 | 14 | 13 | 92.8571 | |
| ckim-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.9241 | 152 | 3 | 153 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 86.8534 | 60 | 2 | 61 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.8506 | 97.7273 | 100.0000 | 74.7059 | 43 | 1 | 43 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.2977 | 49 | 0 | 49 | 0 | 0 | ||