PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46451-46500 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 12 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 87.2928 | 23 | 0 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8383 | 99.8028 | 99.8737 | 55.5058 | 25309 | 50 | 25307 | 32 | 17 | 53.1250 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8273 | 99.7901 | 99.8645 | 55.6157 | 14739 | 31 | 14740 | 20 | 5 | 25.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.1559 | 97.0803 | 99.2556 | 71.4387 | 399 | 12 | 400 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9214 | 99.9312 | 99.9116 | 54.3329 | 10171 | 7 | 10167 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 50.0000 | 60.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.8296 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.8984 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 61.4583 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6291 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.7087 | 45 | 2 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.2812 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.1818 | 96.4286 | 100.0000 | 61.3333 | 27 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.1961 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5100 | 99.3604 | 99.6600 | 70.5987 | 2641 | 17 | 2638 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5267 | 99.5633 | 99.4902 | 73.5096 | 1368 | 6 | 1366 | 7 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2287 | 96.5190 | 100.0000 | 72.9610 | 305 | 11 | 305 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8967 | 100.0000 | 99.7936 | 64.0045 | 968 | 0 | 967 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.5687 | 91.4894 | 95.7447 | 81.3492 | 43 | 4 | 45 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.0952 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 94.3396 | 89.2857 | 100.0000 | 58.4615 | 25 | 3 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.8033 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0730 | 98.4951 | 99.6577 | 70.6945 | 2618 | 40 | 2620 | 9 | 3 | 33.3333 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6000 | 99.6361 | 99.5640 | 74.0720 | 1369 | 5 | 1370 | 6 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.9805 | 88.9241 | 99.6466 | 70.1162 | 281 | 35 | 282 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8968 | 100.0000 | 99.7938 | 64.2989 | 968 | 0 | 968 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8126 | 99.7437 | 99.8815 | 55.8039 | 25294 | 65 | 25297 | 30 | 17 | 56.6667 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8578 | 99.8307 | 99.8849 | 56.2250 | 14745 | 25 | 14747 | 17 | 4 | 23.5294 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0580 | 91.2409 | 99.2084 | 70.5288 | 375 | 36 | 376 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9312 | 99.9607 | 99.9018 | 54.3175 | 10174 | 4 | 10174 | 10 | 10 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2481 | 99.2481 | 99.2481 | 82.9814 | 264 | 2 | 264 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 85.1570 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.3810 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7872 | 99.6565 | 99.9183 | 57.2121 | 17118 | 59 | 17114 | 14 | 8 | 57.1429 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8284 | 99.7474 | 99.9096 | 58.5102 | 11056 | 28 | 11052 | 10 | 4 | 40.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7119 | 99.4908 | 99.9340 | 54.5993 | 6057 | 31 | 6057 | 4 | 4 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7923 | 99.6650 | 99.9200 | 46.9810 | 6247 | 21 | 6247 | 5 | 3 | 60.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7906 | 99.6556 | 99.9260 | 49.2362 | 4051 | 14 | 4051 | 3 | 1 | 33.3333 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1496 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.8829 | 151 | 4 | 152 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 86.8365 | 61 | 1 | 62 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4706 | 93.1818 | 100.0000 | 72.8477 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5789 | 49 | 0 | 49 | 0 | 0 | ||