PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4501-4550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | segdup | * | 98.9694 | 99.5663 | 98.3796 | 89.2053 | 8495 | 37 | 8500 | 140 | 20 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | segdup | het | 98.5379 | 99.3380 | 97.7505 | 88.6829 | 5252 | 35 | 5258 | 121 | 1 | 0.8264 | |
| ltrigg-rtg1 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9027 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.9204 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | * | 98.9993 | 98.7872 | 99.2123 | 93.0351 | 2525 | 31 | 2519 | 20 | 5 | 25.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | het | 98.6970 | 98.5675 | 98.8268 | 93.0098 | 1445 | 21 | 1432 | 17 | 2 | 11.7647 | |
| ltrigg-rtg2 | INDEL | * | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.7193 | 125 | 5 | 133 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdup | homalt | 99.5827 | 99.4792 | 99.6865 | 92.2340 | 955 | 5 | 954 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 100.0000 | 98.4375 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 94.4444 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | segdup | * | 99.1266 | 99.6417 | 98.6169 | 87.5468 | 19467 | 70 | 19465 | 273 | 31 | 11.3553 | |
| ltrigg-rtg1 | SNP | ti | segdup | het | 98.7337 | 99.4597 | 98.0182 | 87.1794 | 11965 | 65 | 11969 | 242 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6577 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | segdup | homalt | 99.7604 | 99.9334 | 99.5880 | 88.0751 | 7500 | 5 | 7494 | 31 | 31 | 100.0000 | |
| jmaeng-gatk | SNP | * | segdup | * | 98.5236 | 99.2803 | 97.7783 | 93.6584 | 27865 | 202 | 27859 | 633 | 14 | 2.2117 | |
| jmaeng-gatk | SNP | * | segdup | het | 97.9514 | 99.4283 | 96.5177 | 95.0045 | 17218 | 99 | 17212 | 621 | 2 | 0.3221 | |
| jmaeng-gatk | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5685 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | segdup | homalt | 99.4625 | 99.0412 | 99.8873 | 88.3992 | 10640 | 103 | 10640 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | SNP | ti | segdup | * | 98.6795 | 99.2681 | 98.0979 | 93.0686 | 19394 | 143 | 19392 | 376 | 6 | 1.5957 | |
| jmaeng-gatk | SNP | ti | segdup | het | 98.2022 | 99.4514 | 96.9839 | 94.5092 | 11964 | 66 | 11962 | 372 | 2 | 0.5376 | |
| jmaeng-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.3311 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | segdup | homalt | 99.4577 | 98.9740 | 99.9462 | 87.6674 | 7428 | 77 | 7428 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | * | 97.4504 | 98.2857 | 96.6292 | 94.0168 | 172 | 3 | 172 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | het | 95.9064 | 98.7952 | 93.1818 | 95.3733 | 82 | 1 | 82 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 89.7862 | 43 | 2 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7914 | 47 | 0 | 47 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.4260 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6759 | 12 | 0 | 12 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | segdup | * | 96.8421 | 97.8723 | 95.8333 | 96.5393 | 46 | 1 | 46 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | het | 95.8333 | 95.8333 | 95.8333 | 97.2125 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2028 | 4 | 0 | 4 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7781 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | * | 96.0650 | 98.9613 | 93.3333 | 95.5900 | 1048 | 11 | 1050 | 75 | 3 | 4.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | het | 93.2743 | 99.0706 | 88.1188 | 96.5876 | 533 | 5 | 534 | 72 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9750 | 44 | 4 | 45 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.8539 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | * | 96.8249 | 99.3654 | 94.4110 | 96.0107 | 1096 | 7 | 1098 | 65 | 2 | 3.0769 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | het | 95.2904 | 99.2775 | 91.6112 | 96.4890 | 687 | 5 | 688 | 63 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6596 | 50 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5203 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | * | 95.0392 | 95.2880 | 94.7917 | 95.0541 | 182 | 9 | 182 | 10 | 4 | 40.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | het | 95.1872 | 96.7391 | 93.6842 | 96.4932 | 89 | 3 | 89 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.8898 | 43 | 6 | 43 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.2967 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | SNP | tv | segdup | * | 97.6941 | 99.0272 | 96.3964 | 93.1340 | 8449 | 83 | 8453 | 316 | 33 | 10.4430 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |