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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 888 889 890 891 892 893 894 895 896 ... 1720 1721 » 44551-44600 / 86044 show all
jlack-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.1723	98.0188	98.3264	71.8409	940	19	940	16	9	56.2500
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	97.5761	98.2544	96.9072	81.0824	394	7	376	12	5	41.6667
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.7060	96.3415	99.1098	37.3606	316	12	334	3	3	100.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7831	100.0000	99.5671	71.3400	230	0	230	1	1	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4066	99.4274	99.3858	50.7439	11807	68	11812	73	23	31.5068
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3167	99.5384	99.0960	53.8093	6685	31	6687	61	11	18.0328
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7481	97.7227	99.7952	31.6698	1459	34	1462	3	3	100.0000
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8365	99.9182	99.7549	50.2169	3663	3	3663	9	9	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6004	98.3998	98.8017	51.3514	3628	59	3628	44	28	63.6364
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6126	98.8520	98.3745	60.9084	1636	19	1634	27	12	44.4444
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.2010	96.9543	99.4801	27.1465	1146	36	1148	6	6	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1213	99.5294	98.7165	50.0292	846	4	846	11	10	90.9091
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	1	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	1	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4812	99.0741	99.8917	37.3686	7383	69	7380	8	2	25.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2056	98.5498	99.8702	37.4713	4621	68	4618	6	0	0.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	64.2857	5	0	5	0	0
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9456	99.9637	99.9275	37.1096	2757	1	2757	2	2	100.0000
jlack-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4758	99.1531	99.8007	37.5709	18029	154	18026	36	2	5.5556
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1734	98.6530	99.6994	37.5173	11279	154	11276	34	0	0.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	70.5882	5	0	5	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9852	100.0000	99.9704	37.6087	6745	0	6745	2	2	100.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6074	99.3012	99.9156	37.6986	10657	75	10657	9	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3742	98.8879	99.8652	37.8733	6669	75	6669	9	0	0.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	100.0000	100.0000	100.0000	37.3409	3987	0	3987	0	0
hfeng-pmm3	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	1	0	0	0
hfeng-pmm3	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	1	0	0	0
hfeng-pmm3	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2201	98.6457	99.8013	56.9126	19593	269	19586	39	21	53.8462
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	99.0338	98.2985	99.7802	60.1845	10919	189	10893	24	6	25.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.7925	97.6137	100.0000	42.2217	2618	64	2637	0	0
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7447	99.7365	99.7529	55.2418	6056	16	6056	15	15	100.0000

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