PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44401-44450 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6785 | 97.8849 | 99.4850 | 27.4595 | 1157 | 25 | 1159 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8234 | 99.7647 | 99.8822 | 49.2225 | 848 | 2 | 848 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4143 | 93.5567 | 99.4521 | 72.2433 | 363 | 25 | 363 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6345 | 97.9145 | 99.3651 | 67.4587 | 939 | 20 | 939 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8616 | 98.0050 | 99.7333 | 77.0080 | 393 | 8 | 374 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8651 | 96.6463 | 99.1150 | 36.8715 | 317 | 11 | 336 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3492 | 99.5652 | 99.1342 | 68.6141 | 229 | 1 | 229 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6118 | 99.3853 | 99.8394 | 49.0173 | 11802 | 73 | 11810 | 19 | 12 | 63.1579 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6720 | 99.5235 | 99.8208 | 51.0416 | 6684 | 32 | 6686 | 12 | 5 | 41.6667 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5421 | 97.3208 | 99.7944 | 32.2970 | 1453 | 40 | 1456 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9319 | 99.9727 | 99.8911 | 50.1493 | 3665 | 1 | 3668 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7656 | 98.4611 | 99.0719 | 67.7717 | 3839 | 60 | 3843 | 36 | 22 | 61.1111 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9127 | 98.8843 | 98.9412 | 74.7999 | 1684 | 19 | 1682 | 18 | 4 | 22.2222 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1998 | 96.4633 | 100.0000 | 41.4933 | 1091 | 40 | 1097 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.1150 | 99.9061 | 98.3364 | 68.3163 | 1064 | 1 | 1064 | 18 | 18 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2054 | 98.6910 | 99.7252 | 56.8874 | 19602 | 260 | 19598 | 54 | 35 | 64.8148 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3263 | 98.9377 | 99.7181 | 59.8869 | 10990 | 118 | 10964 | 31 | 12 | 38.7097 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3074 | 94.9664 | 99.7667 | 39.5535 | 2547 | 135 | 2566 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8026 | 99.8847 | 99.7206 | 56.2796 | 6065 | 7 | 6068 | 17 | 17 | 100.0000 | |
| jli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.1720 | 99.8658 | 94.6197 | 41.0468 | 7442 | 10 | 7439 | 423 | 4 | 0.9456 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.6256 | 99.8294 | 91.7615 | 43.4184 | 4681 | 8 | 4678 | 420 | 1 | 0.2381 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.0093 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3542 | 95.3608 | 97.3684 | 75.3407 | 370 | 18 | 370 | 10 | 7 | 70.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3116 | 97.6190 | 97.0060 | 78.0552 | 164 | 4 | 162 | 5 | 2 | 40.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 95.8333 | 92.0000 | 100.0000 | 66.6667 | 161 | 14 | 163 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.7368 | 100.0000 | 90.0000 | 82.8179 | 45 | 0 | 45 | 5 | 5 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2808 | 99.8350 | 96.7742 | 42.6049 | 18153 | 30 | 18150 | 605 | 8 | 1.3223 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3331 | 99.7813 | 95.0021 | 46.2479 | 11408 | 25 | 11405 | 600 | 4 | 0.6667 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9333 | 99.9259 | 99.9407 | 34.6955 | 6740 | 5 | 6740 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0614 | 99.8136 | 98.3203 | 43.6922 | 10712 | 20 | 10712 | 183 | 5 | 2.7322 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5569 | 99.7479 | 97.3939 | 48.1612 | 6727 | 17 | 6727 | 180 | 3 | 1.6667 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9373 | 99.9248 | 99.9498 | 33.7544 | 3984 | 3 | 3984 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.7029 | 96.5935 | 98.8381 | 61.3357 | 1276 | 45 | 1276 | 15 | 13 | 86.6667 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7191 | 97.1983 | 98.2456 | 71.4465 | 451 | 13 | 448 | 8 | 7 | 87.5000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 43.1608 | 612 | 29 | 615 | 0 | 0 | ||