PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44301-44350 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9125 | 99.8688 | 97.9744 | 43.3648 | 11418 | 15 | 11415 | 236 | 2 | 0.8475 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9629 | 99.9555 | 99.9703 | 35.4085 | 6742 | 3 | 6742 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5866 | 99.8975 | 99.2777 | 41.4403 | 10721 | 11 | 10721 | 78 | 1 | 1.2821 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3508 | 99.8517 | 98.8550 | 44.7482 | 6734 | 10 | 6734 | 78 | 1 | 1.2821 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9875 | 99.9749 | 100.0000 | 34.7199 | 3986 | 1 | 3986 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8905 | 99.9061 | 97.8953 | 39.6283 | 7445 | 7 | 7442 | 160 | 3 | 1.8750 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2887 | 99.8934 | 96.7349 | 41.2956 | 4684 | 5 | 4681 | 158 | 1 | 0.6329 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.3783 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1784 | 99.0254 | 99.3318 | 68.0069 | 3861 | 38 | 3865 | 26 | 15 | 57.6923 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2662 | 99.3541 | 99.1784 | 74.9780 | 1692 | 11 | 1690 | 14 | 3 | 21.4286 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8372 | 97.7011 | 100.0000 | 42.5246 | 1105 | 26 | 1111 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3928 | 99.9061 | 98.8848 | 68.5288 | 1064 | 1 | 1064 | 12 | 12 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.7011 | 99.6968 | 99.7054 | 51.0387 | 11839 | 36 | 11844 | 35 | 16 | 45.7143 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6877 | 99.7767 | 99.5988 | 53.6597 | 6701 | 15 | 6703 | 27 | 8 | 29.6296 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1916 | 98.5934 | 99.7970 | 32.9401 | 1472 | 21 | 1475 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9319 | 100.0000 | 99.8638 | 51.2807 | 3666 | 0 | 3666 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2248 | 98.9691 | 99.4819 | 76.1286 | 384 | 4 | 384 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8024 | 98.8095 | 98.7952 | 79.2500 | 166 | 2 | 164 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.4253 | 98.8571 | 100.0000 | 66.5392 | 173 | 2 | 175 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 84.6939 | 45 | 0 | 45 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 60.5212 | 53.0761 | 70.3956 | 56.0815 | 509 | 450 | 516 | 217 | 206 | 94.9309 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.1872 | 69.5761 | 70.8092 | 55.2972 | 279 | 122 | 245 | 101 | 98 | 97.0297 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 46.1571 | 30.4878 | 94.9640 | 69.3833 | 100 | 228 | 132 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.2841 | 56.5217 | 56.0484 | 43.7642 | 130 | 100 | 139 | 109 | 101 | 92.6606 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 84.5812 | 78.6612 | 91.4649 | 48.1133 | 3067 | 832 | 10502 | 980 | 908 | 92.6531 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 94.6758 | 93.5408 | 95.8387 | 47.4428 | 1593 | 110 | 5988 | 260 | 204 | 78.4615 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.1378 | 44.2087 | 94.0120 | 60.5667 | 500 | 631 | 942 | 60 | 57 | 95.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.7886 | 91.4554 | 84.4045 | 45.0390 | 974 | 91 | 3572 | 660 | 647 | 98.0303 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 63.0435 | 92.8903 | 0 | 0 | 29 | 17 | 8 | 47.0588 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 72.7273 | 94.2105 | 0 | 0 | 8 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 78.9474 | 92.6357 | 0 | 0 | 15 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 37.5000 | 91.9598 | 0 | 0 | 6 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 36.8670 | 24.7423 | 72.2944 | 43.7956 | 96 | 292 | 334 | 128 | 127 | 99.2188 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 45.8194 | 33.3333 | 73.2620 | 48.9071 | 56 | 112 | 137 | 50 | 50 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 19.3536 | 10.8571 | 89.0110 | 49.7238 | 19 | 156 | 81 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.6328 | 46.6667 | 63.0435 | 33.0909 | 21 | 24 | 116 | 68 | 67 | 98.5294 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 82.4818 | 94.3177 | 0 | 1 | 113 | 24 | 14 | 58.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 91.9355 | 93.4322 | 0 | 1 | 57 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 70.0000 | 94.7984 | 0 | 0 | 28 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 80.0000 | 94.9857 | 0 | 0 | 28 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 63.9710 | 53.3687 | 79.8301 | 38.1774 | 705 | 616 | 2632 | 665 | 660 | 99.2481 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.6904 | 73.7069 | 86.7312 | 40.6237 | 342 | 122 | 1255 | 192 | 190 | 98.9583 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 48.0410 | 32.1373 | 95.1060 | 47.1096 | 206 | 435 | 583 | 30 | 30 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.1726 | 72.6852 | 64.1876 | 28.7853 | 157 | 59 | 794 | 443 | 440 | 99.3228 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.2052 | 90.5600 | 93.9113 | 48.2920 | 10754 | 1121 | 12339 | 800 | 737 | 92.1250 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4514 | 96.5009 | 98.4209 | 44.2767 | 6481 | 235 | 7230 | 116 | 68 | 58.6207 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.8995 | 44.8091 | 95.0199 | 66.3989 | 669 | 824 | 954 | 50 | 47 | 94.0000 | |