PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 880 881 882 883 884 885 886 887 888 ... 1720 1721 » 44151-44200 / 86044 show all
ckim-dragen	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2793	99.0236	99.5363	51.7187	3651	36	3649	17	15	88.2353
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3936	99.0937	99.6953	60.8166	1640	15	1636	5	3	60.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.9371	98.3926	99.4876	27.8052	1163	19	1165	6	6	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5305	99.7647	99.2974	52.1032	848	2	848	6	6	100.0000
ckim-dragen	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1772	98.9228	99.4328	67.8997	3857	42	3857	22	16	72.7273
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4408	99.3541	99.5277	74.9889	1692	11	1686	8	2	25.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6105	97.2591	100.0000	41.6754	1100	31	1107	0	0
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	100.0000	98.7013	68.4149	1065	0	1064	14	14	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6797	99.5705	99.7890	51.2505	11824	51	11826	25	20	80.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7691	99.7171	99.8211	53.8271	6697	19	6696	12	7	58.3333
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	99.0896	98.3925	99.7967	32.3556	1469	24	1473	3	3	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7545	99.7818	99.7273	51.7500	3658	8	3657	10	10	100.0000
ckim-vqsr	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	97.9112	96.6495	99.2063	75.8157	375	13	375	3	2	66.6667
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	98.1963	97.6190	98.7805	79.4486	164	4	162	2	1	50.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.3607	94.8571	100.0000	65.1452	166	9	168	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.9011	100.0000	97.8261	83.7456	45	0	45	1	1	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6815	97.8712	99.5052	68.1063	3816	83	3821	19	14	73.6842
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2934	99.0605	99.5275	75.3924	1687	16	1685	8	3	37.5000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	96.9476	94.0760	100.0000	38.5189	1064	67	1071	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4862	100.0000	98.9777	68.5196	1065	0	1065	11	11	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.5441	97.3505	99.7673	61.8300	1286	35	1286	3	2	66.6667
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2409	98.7069	99.7807	72.5962	458	6	455	1	0	0.0000
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.6856	95.4758	100.0000	40.5222	612	29	615	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5392	100.0000	99.0826	67.8940	216	0	216	2	2	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6415	99.4695	99.8142	51.5034	11812	63	11817	22	15	68.1818
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.7468	99.7171	99.7766	54.5091	6697	19	6699	15	8	53.3333
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4732	97.1869	99.7941	31.3060	1451	42	1454	3	3	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9182	99.9454	99.8909	51.3011	3664	2	3664	4	4	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2927	98.9965	99.5907	51.8966	3650	37	3650	15	12	80.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4854	99.3353	99.6359	61.3327	1644	11	1642	6	3	50.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.6785	97.8849	99.4850	27.6398	1157	25	1159	6	6	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7650	99.8824	99.6479	51.2307	849	1	849	3	3	100.0000
ckim-vqsr	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	*		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	het		0.0000	0.0000	0.0000	0	1	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	C1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	98.9022	98.6444	99.1614	72.9208	946	13	946	8	6	75.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	99.2375	99.0025	99.4737	82.2678	397	4	378	2	1	50.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.1793	97.2561	99.1202	37.6600	319	9	338	3	3	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3521	100.0000	98.7124	72.0288	230	0	230	3	2	66.6667
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4319	99.1366	99.7290	37.0539	18026	157	18031	49	28	57.1429

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge