PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43901-43950 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 75.9768 | 87.8450 | 66.9339 | 67.8314 | 1496 | 207 | 1670 | 825 | 122 | 14.7879 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.8362 | 74.7126 | 85.7143 | 54.9550 | 845 | 286 | 600 | 100 | 84 | 84.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.5160 | 85.8216 | 89.2788 | 67.7054 | 914 | 151 | 916 | 110 | 41 | 37.2727 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 89.9321 | 98.7700 | 82.5458 | 58.4226 | 10600 | 132 | 10674 | 2257 | 114 | 5.0510 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 85.9520 | 98.7396 | 76.0968 | 60.6268 | 6659 | 85 | 6730 | 2114 | 90 | 4.2573 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 18.1818 | 100.0000 | 10.0000 | 75.6098 | 1 | 0 | 1 | 9 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7559 | 98.8212 | 96.7133 | 52.5820 | 3940 | 47 | 3943 | 134 | 24 | 17.9104 | |
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.2577 | 0.0000 | 0.0000 | 1 | 387 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.5952 | 0.0000 | 0.0000 | 1 | 167 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 175 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.3800 | 79.7888 | 99.0444 | 59.7268 | 14508 | 3675 | 14511 | 140 | 39 | 27.8571 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 87.8512 | 79.2181 | 98.5961 | 65.0515 | 9057 | 2376 | 9060 | 129 | 28 | 21.7054 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 55.5556 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.2731 | 80.7561 | 99.7985 | 45.8371 | 5447 | 1298 | 5447 | 11 | 11 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 74.7445 | 74.1265 | 75.3730 | 58.4574 | 14723 | 5139 | 14700 | 4803 | 4251 | 88.5072 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.9421 | 97.2812 | 69.3022 | 61.0030 | 10806 | 302 | 10816 | 4791 | 4241 | 88.5201 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.4847 | 0.0000 | 0.0000 | 13 | 2669 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.1733 | 64.2951 | 99.6920 | 43.7482 | 3904 | 2168 | 3884 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.6110 | 52.5360 | 98.8604 | 77.0138 | 694 | 627 | 694 | 8 | 6 | 75.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 60.2985 | 43.5345 | 98.0583 | 86.3666 | 202 | 262 | 202 | 4 | 2 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 75.7488 | 61.1544 | 99.4924 | 57.4514 | 392 | 249 | 392 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.8931 | 46.2963 | 98.0392 | 83.4684 | 100 | 116 | 100 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.8275 | 71.3902 | 98.6286 | 59.1429 | 5320 | 2132 | 5322 | 74 | 14 | 18.9189 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.0473 | 70.6121 | 97.9019 | 63.3528 | 3311 | 1378 | 3313 | 71 | 11 | 15.4930 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 55.5556 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.1376 | 72.6976 | 99.8506 | 49.3441 | 2005 | 753 | 2005 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.1450 | 34.5361 | 98.5294 | 84.0936 | 134 | 254 | 134 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 40.0000 | 25.0000 | 100.0000 | 89.1473 | 42 | 126 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 59.7610 | 42.8571 | 98.6842 | 72.9537 | 75 | 100 | 75 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.9683 | 37.7778 | 94.4444 | 90.3743 | 17 | 28 | 17 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.2144 | 57.9892 | 95.6871 | 78.8764 | 2261 | 1638 | 2263 | 102 | 21 | 20.5882 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 64.6064 | 50.2642 | 90.4008 | 85.4064 | 856 | 847 | 857 | 91 | 11 | 12.0879 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 84.4037 | 73.2095 | 99.6390 | 55.5377 | 828 | 303 | 828 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 69.9400 | 54.1784 | 98.6348 | 79.3006 | 577 | 488 | 578 | 8 | 7 | 87.5000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 25.0000 | 97.0149 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 16.6667 | 97.4026 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9498 | 85.6224 | 99.2869 | 60.0604 | 9189 | 1543 | 9190 | 66 | 25 | 37.8788 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.5844 | 85.2017 | 99.0009 | 65.9710 | 5746 | 998 | 5747 | 58 | 17 | 29.3103 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.5642 | 86.3306 | 99.7681 | 43.5629 | 3442 | 545 | 3442 | 8 | 8 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 17.8423 | 11.0825 | 45.7447 | 82.7206 | 43 | 345 | 43 | 51 | 42 | 82.3529 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 175 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 68.7950 | 62.4006 | 76.6496 | 65.6998 | 2433 | 1466 | 2393 | 729 | 415 | 56.9273 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.0114 | 86.8467 | 75.9109 | 68.6846 | 1479 | 224 | 1500 | 476 | 205 | 43.0672 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 4.3324 | 0.0000 | 0.0000 | 49 | 1082 | 0 | 0 | 0 | ||