PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43501-43550 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.7145 | 97.0238 | 96.4072 | 78.9673 | 163 | 5 | 161 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.7552 | 93.7143 | 100.0000 | 65.3445 | 164 | 11 | 166 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.8261 | 100.0000 | 95.7447 | 83.3333 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4780 | 96.5462 | 96.4099 | 50.7305 | 19176 | 686 | 28090 | 1046 | 443 | 42.3518 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.8049 | 97.4163 | 96.2011 | 51.9614 | 10821 | 287 | 18967 | 749 | 273 | 36.4486 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 93.8071 | 88.7770 | 99.4413 | 46.0843 | 2381 | 301 | 890 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.4720 | 98.3860 | 96.5748 | 48.1258 | 5974 | 98 | 8233 | 292 | 166 | 56.8493 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 83.3333 | 94.6429 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 94.3182 | 0 | 0 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7849 | 95.2033 | 78.0622 | 70.1093 | 913 | 46 | 854 | 240 | 21 | 8.7500 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9032 | 98.0050 | 78.0606 | 68.7737 | 393 | 8 | 644 | 181 | 16 | 8.8398 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.8537 | 100.0000 | 298 | 30 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 86.3189 | 96.5217 | 78.0669 | 73.5497 | 222 | 8 | 210 | 59 | 5 | 8.4746 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2242 | 97.7347 | 98.7186 | 47.5188 | 11606 | 269 | 11787 | 153 | 107 | 69.9346 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2934 | 98.0494 | 98.5385 | 48.6812 | 6585 | 131 | 8091 | 120 | 75 | 62.5000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.7853 | 93.7709 | 100.0000 | 79.8165 | 1400 | 93 | 22 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9409 | 98.7725 | 99.1098 | 44.1885 | 3621 | 45 | 3674 | 33 | 32 | 96.9697 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 65.4206 | 0 | 0 | 0 | 74 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 54.0984 | 0 | 0 | 0 | 56 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 80.2198 | 0 | 0 | 0 | 18 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 75.0000 | 95.3125 | 0 | 1 | 9 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 95.3846 | 0 | 1 | 6 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.8276 | 0 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3339 | 99.0472 | 99.6223 | 38.0132 | 7381 | 71 | 7385 | 28 | 18 | 64.2857 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2827 | 98.8697 | 99.6991 | 37.4429 | 4636 | 53 | 4639 | 14 | 4 | 28.5714 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4376 | 99.3474 | 99.5280 | 38.8679 | 2740 | 18 | 2741 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2708 | 98.9378 | 99.6061 | 37.1789 | 10618 | 114 | 10620 | 42 | 29 | 69.0476 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1511 | 98.7248 | 99.5812 | 37.8775 | 6658 | 86 | 6657 | 28 | 16 | 57.1429 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4850 | 99.2977 | 99.6730 | 35.9284 | 3959 | 28 | 3962 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3283 | 99.2191 | 99.4377 | 37.1644 | 18041 | 142 | 18038 | 102 | 2 | 1.9608 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9397 | 98.7667 | 99.1133 | 38.6843 | 11292 | 141 | 11289 | 101 | 1 | 0.9901 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9852 | 99.9852 | 99.9852 | 34.3808 | 6744 | 1 | 6744 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8632 | 98.1277 | 99.6099 | 65.9765 | 3826 | 73 | 3830 | 15 | 10 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0254 | 98.4733 | 99.5838 | 72.6059 | 1677 | 26 | 1675 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.9702 | 96.0212 | 100.0000 | 40.0000 | 1086 | 45 | 1092 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5318 | 99.8122 | 99.2530 | 67.9437 | 1063 | 2 | 1063 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1161 | 96.5935 | 99.6875 | 59.6596 | 1276 | 45 | 1276 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1406 | 96.7672 | 99.5536 | 69.6682 | 449 | 15 | 446 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6038 | 95.3198 | 100.0000 | 41.4681 | 611 | 30 | 614 | 0 | 0 | ||