PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43451-43500 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 75.0000 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 87.5000 | 93.7853 | 0 | 1 | 77 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 77.2727 | 93.3735 | 0 | 1 | 34 | 10 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.7242 | 0 | 0 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.4545 | 93.4328 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1571 | 98.6358 | 99.6839 | 46.3252 | 11713 | 162 | 11670 | 37 | 13 | 35.1351 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9876 | 98.4366 | 99.5448 | 47.2044 | 6611 | 105 | 6561 | 30 | 6 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6147 | 97.5887 | 99.6624 | 46.5729 | 1457 | 36 | 1476 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6854 | 99.4272 | 99.9450 | 44.5461 | 3645 | 21 | 3633 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9195 | 98.2099 | 99.6395 | 45.6518 | 3621 | 66 | 3593 | 13 | 7 | 53.8462 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1170 | 98.6103 | 99.6289 | 50.5656 | 1632 | 23 | 1611 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1564 | 96.8697 | 99.4778 | 38.9804 | 1145 | 37 | 1143 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5867 | 99.2941 | 99.8810 | 43.2816 | 844 | 6 | 839 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 91.8969 | 0 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 100.0000 | 89.6396 | 0 | 0 | 23 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 91.9431 | 0 | 0 | 17 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.3636 | 0 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6113 | 96.0375 | 99.2375 | 61.0025 | 921 | 38 | 911 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7138 | 96.0100 | 99.4792 | 68.9069 | 385 | 16 | 382 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.8866 | 95.1220 | 98.7179 | 46.1140 | 312 | 16 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1285 | 98.7253 | 99.5351 | 51.6909 | 3640 | 47 | 3640 | 17 | 14 | 82.3529 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3640 | 99.1541 | 99.5747 | 61.1334 | 1641 | 14 | 1639 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4186 | 97.3773 | 99.4823 | 27.6981 | 1151 | 31 | 1153 | 6 | 6 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 50.8083 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2739 | 96.9720 | 99.6112 | 61.8511 | 1281 | 40 | 1281 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0235 | 98.4914 | 99.5614 | 72.6291 | 457 | 7 | 454 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3579 | 94.8518 | 100.0000 | 40.3320 | 608 | 33 | 611 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 67.8414 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3937 | 99.6425 | 99.1462 | 42.0410 | 18118 | 65 | 18115 | 156 | 2 | 1.2821 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1381 | 99.6239 | 98.6571 | 45.3917 | 11390 | 43 | 11387 | 155 | 1 | 0.6452 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8292 | 99.6738 | 99.9851 | 35.1779 | 6723 | 22 | 6723 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5812 | 99.7018 | 99.4609 | 42.3318 | 10700 | 32 | 10700 | 58 | 2 | 3.4483 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4232 | 99.6886 | 99.1593 | 46.1734 | 6723 | 21 | 6723 | 57 | 1 | 1.7544 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8493 | 99.7241 | 99.9749 | 34.2862 | 3976 | 11 | 3976 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1246 | 99.5572 | 98.6958 | 41.6434 | 7419 | 33 | 7416 | 98 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7300 | 99.5308 | 97.9420 | 44.2389 | 4667 | 22 | 4664 | 98 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8002 | 99.6012 | 100.0000 | 36.4268 | 2747 | 11 | 2747 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6163 | 97.7687 | 99.4788 | 68.1894 | 3812 | 87 | 3817 | 20 | 13 | 65.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2044 | 98.8843 | 99.5266 | 75.4930 | 1684 | 19 | 1682 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.9945 | 94.1645 | 100.0000 | 38.4968 | 1065 | 66 | 1072 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3458 | 99.8122 | 98.8837 | 68.5948 | 1063 | 2 | 1063 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5149 | 99.3263 | 99.7043 | 51.4820 | 11795 | 80 | 11800 | 35 | 21 | 60.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6201 | 99.5533 | 99.6870 | 54.4597 | 6686 | 30 | 6688 | 21 | 7 | 33.3333 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2315 | 96.7180 | 99.7931 | 31.3447 | 1444 | 49 | 1447 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8366 | 99.9727 | 99.7008 | 51.3048 | 3665 | 1 | 3665 | 11 | 11 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |