PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43351-43400 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4680 | 99.0588 | 99.8807 | 41.3986 | 842 | 8 | 837 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0316 | 99.5706 | 98.4983 | 37.0609 | 7420 | 32 | 7412 | 113 | 2 | 1.7699 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5426 | 99.4455 | 97.6559 | 38.3006 | 4663 | 26 | 4666 | 112 | 1 | 0.8929 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8729 | 99.7825 | 99.9635 | 34.6365 | 2752 | 6 | 2741 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 92.9005 | 92.0300 | 93.7875 | 53.5986 | 18279 | 1583 | 18267 | 1210 | 1145 | 94.6281 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5431 | 94.7785 | 92.3395 | 52.9259 | 10528 | 580 | 10511 | 872 | 826 | 94.7248 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8304 | 69.7614 | 98.9490 | 45.2532 | 1871 | 811 | 1883 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.8406 | 96.8379 | 94.8635 | 56.7607 | 5880 | 192 | 5873 | 318 | 299 | 94.0252 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1654 | 99.5545 | 98.7794 | 37.2444 | 18102 | 81 | 18127 | 224 | 7 | 3.1250 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7965 | 99.5102 | 98.0929 | 39.5838 | 11377 | 56 | 11419 | 222 | 6 | 2.7027 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7995 | 99.6294 | 99.9702 | 32.6604 | 6720 | 25 | 6703 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8496 | 98.7433 | 98.9562 | 63.8705 | 3850 | 49 | 3887 | 41 | 14 | 34.1463 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2976 | 98.3558 | 98.2394 | 68.7282 | 1675 | 28 | 1674 | 30 | 5 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0806 | 98.7622 | 99.4012 | 57.1167 | 1117 | 14 | 1162 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4816 | 99.3427 | 99.6209 | 60.8825 | 1058 | 7 | 1051 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9665 | 97.1234 | 98.8245 | 57.1668 | 1283 | 38 | 1261 | 15 | 8 | 53.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7655 | 97.6293 | 97.9021 | 61.5936 | 453 | 11 | 420 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0306 | 96.7239 | 99.3730 | 52.6355 | 620 | 21 | 634 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.8670 | 86.0825 | 98.4848 | 65.2997 | 334 | 54 | 325 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.3706 | 85.7143 | 97.8261 | 63.1016 | 144 | 24 | 135 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 91.6942 | 85.1429 | 99.3377 | 63.8756 | 149 | 26 | 150 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 74.2138 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8166 | 98.1371 | 99.5056 | 55.0392 | 19492 | 370 | 19523 | 97 | 32 | 32.9897 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7118 | 98.0915 | 99.3400 | 56.1553 | 10896 | 212 | 10837 | 72 | 12 | 16.6667 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6327 | 95.7867 | 99.5512 | 56.7594 | 2569 | 113 | 2662 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5211 | 99.2589 | 99.7847 | 51.9691 | 6027 | 45 | 6024 | 13 | 8 | 61.5385 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 94.6746 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.2381 | 0 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.8718 | 0 | 0 | 2 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9586 | 98.9331 | 97.0031 | 50.6413 | 17989 | 194 | 18029 | 557 | 149 | 26.7504 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7673 | 98.4344 | 97.1092 | 52.3550 | 11254 | 179 | 11287 | 336 | 18 | 5.3571 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3156 | 99.8517 | 96.8261 | 47.4887 | 6735 | 10 | 6742 | 221 | 131 | 59.2760 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4218 | 98.7654 | 96.1142 | 48.1999 | 7360 | 92 | 7371 | 298 | 81 | 27.1812 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.0939 | 98.2086 | 96.0042 | 48.3222 | 4605 | 84 | 4613 | 192 | 8 | 4.1667 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0622 | 99.8912 | 96.2989 | 47.9935 | 2755 | 3 | 2758 | 106 | 73 | 68.8679 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.5638 | 41.4948 | 68.0851 | 72.2550 | 161 | 227 | 160 | 75 | 74 | 98.6667 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 71.1111 | 76.1905 | 66.6667 | 71.4710 | 128 | 40 | 128 | 64 | 63 | 98.4375 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.5714 | 0.0000 | 0.0000 | 1 | 174 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.7273 | 71.1111 | 74.4186 | 75.2874 | 32 | 13 | 32 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3288 | 99.0403 | 97.6276 | 52.2232 | 10629 | 103 | 10658 | 259 | 68 | 26.2548 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2384 | 98.5913 | 97.8879 | 54.8387 | 6649 | 95 | 6674 | 144 | 10 | 6.9444 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4919 | 99.8244 | 97.1944 | 47.1301 | 3980 | 7 | 3984 | 115 | 58 | 50.4348 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.5827 | 62.3493 | 84.0263 | 65.9228 | 2431 | 1468 | 2425 | 461 | 430 | 93.2755 | |