PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42551-42600 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4929 | 96.4286 | 96.5574 | 68.3610 | 594 | 22 | 589 | 21 | 20 | 95.2381 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1012 | 99.3902 | 94.9153 | 88.6973 | 163 | 1 | 112 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7582 | 92.4731 | 97.1591 | 69.7074 | 172 | 14 | 171 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.6667 | 88.5714 | 97.1591 | 68.0581 | 31 | 4 | 171 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 93.3775 | 0.0000 | 0.0000 | 141 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6263 | 91.4498 | 98.0315 | 68.7192 | 246 | 23 | 249 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0465 | 88.2353 | 98.4127 | 67.1447 | 45 | 6 | 248 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.1659 | 0.0000 | 0.0000 | 200 | 17 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.0000 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 80.0000 | 94.9495 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.7077 | 92.3701 | 95.0845 | 58.6667 | 569 | 47 | 619 | 32 | 28 | 87.5000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.8694 | 94.5122 | 95.2294 | 59.8083 | 155 | 9 | 519 | 26 | 23 | 88.4615 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 89.7143 | 0.0000 | 0.0000 | 314 | 36 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1538 | 98.0392 | 94.3396 | 51.5982 | 100 | 2 | 100 | 6 | 5 | 83.3333 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.7796 | 85.3147 | 96.9925 | 91.6614 | 122 | 21 | 129 | 4 | 2 | 50.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.5954 | 83.3333 | 96.8750 | 92.7928 | 85 | 17 | 93 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.6380 | 90.2439 | 97.2973 | 85.9316 | 37 | 4 | 36 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.2014 | 93.3840 | 97.0909 | 41.7126 | 1228 | 87 | 1335 | 40 | 33 | 82.5000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6679 | 92.1212 | 97.3595 | 41.8524 | 304 | 26 | 1143 | 31 | 26 | 83.8710 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 92.4338 | 0.0000 | 0.0000 | 733 | 60 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4606 | 99.4792 | 95.5224 | 40.8824 | 191 | 1 | 192 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.0000 | 88.4615 | 95.8333 | 90.9774 | 23 | 3 | 23 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8723 | 100.0000 | 95.8333 | 90.5512 | 3 | 0 | 23 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 86.9565 | 0.0000 | 0.0000 | 20 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7357 | 95.1299 | 98.3966 | 42.6150 | 1172 | 60 | 1166 | 19 | 9 | 47.3684 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7502 | 94.8052 | 98.7768 | 42.3619 | 365 | 20 | 969 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 93.8462 | 0.0000 | 0.0000 | 610 | 40 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.2544 | 100.0000 | 96.5686 | 43.8017 | 197 | 0 | 197 | 7 | 2 | 28.5714 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.4976 | 75.5245 | 18.3280 | 86.4488 | 108 | 35 | 114 | 508 | 25 | 4.9213 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.3240 | 74.5098 | 15.2542 | 84.3039 | 76 | 26 | 81 | 450 | 7 | 1.5556 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 49.5193 | 78.0488 | 36.2637 | 92.4606 | 32 | 9 | 33 | 58 | 18 | 31.0345 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.8960 | 70.2970 | 16.6292 | 88.2926 | 71 | 30 | 74 | 371 | 22 | 5.9299 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 21.1754 | 68.1818 | 12.5341 | 86.6642 | 45 | 21 | 46 | 321 | 6 | 1.8692 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4043 | 74.2857 | 35.8974 | 92.5643 | 26 | 9 | 28 | 50 | 16 | 32.0000 | |