PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42301-42350 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1564 | 95.4426 | 96.8811 | 68.1564 | 2534 | 121 | 2485 | 80 | 69 | 86.2500 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.0781 | 96.4876 | 95.6720 | 82.3695 | 934 | 34 | 840 | 38 | 30 | 78.9474 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.9073 | 92.8033 | 99.2261 | 33.2760 | 1109 | 86 | 1154 | 9 | 8 | 88.8889 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.6535 | 99.7967 | 93.7023 | 60.6607 | 491 | 1 | 491 | 33 | 31 | 93.9394 | |
| hfeng-pmm3 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9438 | 90.8602 | 99.4118 | 70.1230 | 169 | 17 | 169 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0156 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.8621 | 92.0530 | 100.0000 | 48.9510 | 139 | 12 | 146 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.0563 | 64.2857 | 93.1034 | 91.2651 | 27 | 15 | 27 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.6842 | 58.3333 | 100.0000 | 90.7080 | 21 | 15 | 21 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.4528 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8189 | 94.9153 | 98.8005 | 65.6974 | 2520 | 135 | 2471 | 30 | 22 | 73.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4421 | 93.6983 | 97.2521 | 80.7365 | 907 | 61 | 814 | 23 | 16 | 69.5652 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.9869 | 94.2259 | 99.9146 | 34.2135 | 1126 | 69 | 1170 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8832 | 98.9837 | 98.7830 | 57.7187 | 487 | 5 | 487 | 6 | 5 | 83.3333 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.8897 | 76.2238 | 90.8333 | 92.9947 | 109 | 34 | 109 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.3481 | 68.6275 | 88.6076 | 92.5047 | 70 | 32 | 70 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 93.7785 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.4167 | 81.1881 | 90.1099 | 93.4106 | 82 | 19 | 82 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.0323 | 74.2424 | 84.4828 | 92.9952 | 49 | 17 | 49 | 9 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.0588 | 94.2857 | 100.0000 | 94.0325 | 33 | 2 | 33 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 91.0931 | 22 | 4 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.0233 | 86.9565 | 100.0000 | 75.2809 | 20 | 3 | 22 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.5510 | 90.3346 | 99.1803 | 76.4251 | 243 | 26 | 242 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.3255 | 78.4314 | 93.5484 | 94.5993 | 40 | 11 | 29 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.4200 | 93.0876 | 100.0000 | 40.2817 | 202 | 15 | 212 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0566 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8631 | 95.1331 | 98.6572 | 48.4108 | 1251 | 64 | 1249 | 17 | 12 | 70.5882 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7156 | 93.6364 | 95.8199 | 71.7786 | 309 | 21 | 298 | 13 | 9 | 69.2308 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.2176 | 94.7037 | 99.8686 | 24.8766 | 751 | 42 | 760 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9637 | 99.4792 | 98.4536 | 42.7729 | 191 | 1 | 191 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||