PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4051-4100 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | segdup | homalt | 98.2382 | 96.5889 | 99.9449 | 87.7431 | 7249 | 256 | 7249 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | SNP | tv | segdup | * | 97.9981 | 96.6831 | 99.3493 | 93.1884 | 8249 | 283 | 8245 | 54 | 6 | 11.1111 | |
| asubramanian-gatk | SNP | tv | segdup | het | 97.9042 | 96.7657 | 99.0698 | 94.3222 | 5116 | 171 | 5112 | 48 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5000 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | segdup | homalt | 98.1636 | 96.5720 | 99.8085 | 89.8001 | 3127 | 111 | 3127 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | SNP | * | segdup | * | 98.1237 | 96.8005 | 99.4836 | 92.0357 | 27169 | 898 | 27163 | 141 | 14 | 9.9291 | |
| asubramanian-gatk | SNP | * | segdup | het | 98.0720 | 96.9394 | 99.2313 | 93.3046 | 16787 | 530 | 16781 | 130 | 4 | 3.0769 | |
| asubramanian-gatk | SNP | * | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.5309 | 6 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | segdup | homalt | 98.2111 | 96.5838 | 99.8941 | 88.4606 | 10376 | 367 | 10376 | 11 | 10 | 90.9091 | |
| asubramanian-gatk | INDEL | D1_5 | segdup | * | 98.9561 | 98.7307 | 99.1826 | 95.3977 | 1089 | 14 | 1092 | 9 | 1 | 11.1111 | |
| asubramanian-gatk | INDEL | D1_5 | segdup | het | 98.6259 | 98.4104 | 98.8423 | 95.7351 | 681 | 11 | 683 | 8 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6266 | 51 | 1 | 52 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | segdup | homalt | 99.5816 | 99.4429 | 99.7207 | 94.5193 | 357 | 2 | 357 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | * | 95.6522 | 93.6170 | 97.7778 | 96.4143 | 44 | 3 | 44 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | het | 97.8723 | 95.8333 | 100.0000 | 96.8536 | 23 | 1 | 23 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | segdup | hetalt | 75.0000 | 75.0000 | 75.0000 | 97.4522 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 95.0954 | 18 | 1 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | segdup | * | 98.7667 | 98.2059 | 99.3340 | 95.0336 | 1040 | 19 | 1044 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | het | 98.4123 | 97.7695 | 99.0637 | 96.0327 | 526 | 12 | 529 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1889 | 45 | 3 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | segdup | homalt | 99.3644 | 99.1543 | 99.5754 | 92.7483 | 469 | 4 | 469 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | segdup | * | 97.9592 | 96.0000 | 100.0000 | 93.3884 | 168 | 7 | 168 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | segdup | het | 97.5309 | 95.1807 | 100.0000 | 94.6038 | 79 | 4 | 79 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.1149 | 43 | 2 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 92.8349 | 46 | 1 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdup | * | 96.0000 | 94.2408 | 97.8261 | 94.5287 | 180 | 11 | 180 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | het | 97.2067 | 94.5652 | 100.0000 | 96.0775 | 87 | 5 | 87 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.2747 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | segdup | * | 91.5860 | 90.4805 | 92.7189 | 94.7590 | 998 | 105 | 1006 | 79 | 52 | 65.8228 | |
| anovak-vg | INDEL | D1_5 | segdup | het | 93.3306 | 94.0751 | 92.5978 | 95.1126 | 651 | 41 | 663 | 53 | 34 | 64.1509 | |
| anovak-vg | INDEL | D1_5 | segdup | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdup | homalt | 93.5483 | 94.1504 | 92.9539 | 93.9028 | 338 | 21 | 343 | 26 | 18 | 69.2308 | |
| anovak-vg | INDEL | D6_15 | segdup | * | 70.1754 | 62.8272 | 79.4702 | 93.2348 | 120 | 71 | 120 | 31 | 23 | 74.1935 | |
| anovak-vg | INDEL | D6_15 | segdup | het | 75.5396 | 76.0870 | 75.0000 | 93.8242 | 70 | 22 | 78 | 26 | 20 | 76.9231 | |
| anovak-vg | INDEL | D6_15 | segdup | hetalt | 0.0000 | 18.3673 | 0.0000 | 0.0000 | 9 | 40 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | segdup | homalt | 85.5227 | 82.0000 | 89.3617 | 91.4234 | 41 | 9 | 42 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | * | 76.0605 | 68.9655 | 84.7826 | 91.5129 | 40 | 18 | 39 | 7 | 4 | 57.1429 | |
| anovak-vg | INDEL | D16_PLUS | segdup | het | 82.8571 | 78.3784 | 87.8788 | 91.3613 | 29 | 8 | 29 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | segdup | homalt | 83.6502 | 91.6667 | 76.9231 | 91.8750 | 11 | 1 | 10 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | * | segdup | * | 73.2929 | 72.4961 | 74.1075 | 94.2874 | 1853 | 703 | 1889 | 660 | 536 | 81.2121 | |
| anovak-vg | INDEL | * | segdup | het | 72.6201 | 63.5061 | 84.7882 | 95.6374 | 931 | 535 | 981 | 176 | 91 | 51.7045 | |
| anovak-vg | INDEL | * | segdup | hetalt | 0.0000 | 21.5385 | 0.0000 | 0.0000 | 28 | 102 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | segdup | homalt | 76.7205 | 93.1250 | 65.2299 | 92.3073 | 894 | 66 | 908 | 484 | 445 | 91.9421 | |
| anovak-vg | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 60.0000 | 99.0619 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 60.0000 | 98.8610 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||