PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39401-39450 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 24.9211 | 237 | 0 | 238 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.0244 | 59 | 0 | 59 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4603 | 98.9667 | 99.9588 | 33.4796 | 7279 | 76 | 7275 | 3 | 2 | 66.6667 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2363 | 98.5269 | 99.9560 | 35.0014 | 4548 | 68 | 4544 | 2 | 1 | 50.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8537 | 99.7443 | 99.9634 | 30.7478 | 2731 | 7 | 2731 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7395 | 99.5954 | 99.8841 | 36.0267 | 1723 | 7 | 1724 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6431 | 99.2888 | 100.0000 | 46.4313 | 698 | 5 | 698 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.3473 | 582 | 2 | 583 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.6549 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8650 | 99.8038 | 99.9264 | 43.6688 | 4069 | 8 | 4072 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8248 | 99.7374 | 99.9124 | 46.8961 | 2279 | 6 | 2282 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6750 | 99.5671 | 99.7831 | 29.4028 | 460 | 2 | 460 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.6667 | 1330 | 0 | 1330 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6188 | 99.5238 | 99.7140 | 62.1846 | 1045 | 5 | 1046 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5738 | 99.3617 | 99.7868 | 68.6707 | 467 | 3 | 468 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6795 | 99.3610 | 100.0000 | 35.0731 | 311 | 2 | 311 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.2907 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7602 | 99.5215 | 100.0000 | 47.2081 | 416 | 2 | 416 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0536 | 100.0000 | 98.1250 | 68.1909 | 157 | 0 | 157 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 79.2517 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6259 | 45 | 0 | 45 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 82.2222 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.6735 | 8 | 0 | 8 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4476 | 99.1594 | 99.7375 | 38.8443 | 3421 | 29 | 3420 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3198 | 99.0645 | 99.5765 | 41.0214 | 2118 | 20 | 2116 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6940 | 99.3898 | 100.0000 | 34.8326 | 1303 | 8 | 1304 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7548 | 99.6881 | 99.8216 | 48.8361 | 6712 | 21 | 6714 | 12 | 8 | 66.6667 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.8452 | 98.0861 | 99.6161 | 43.6147 | 410 | 8 | 519 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0447 | 96.7213 | 99.4048 | 55.2000 | 118 | 4 | 167 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 22.9917 | 235 | 2 | 278 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6276 | 96.6102 | 98.6667 | 60.1064 | 57 | 2 | 74 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3908 | 99.0173 | 99.7672 | 36.4175 | 1713 | 17 | 1714 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1404 | 98.4353 | 99.8557 | 46.9778 | 692 | 11 | 692 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7425 | 99.4863 | 100.0000 | 18.9415 | 581 | 3 | 582 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3228 | 99.3228 | 99.3228 | 34.5643 | 440 | 3 | 440 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1674 | 98.6667 | 99.6732 | 58.9400 | 1036 | 14 | 1220 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5619 | 97.6596 | 99.4810 | 64.5181 | 459 | 11 | 575 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8400 | 99.6805 | 100.0000 | 34.5560 | 312 | 1 | 339 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4622 | 99.2509 | 99.6743 | 63.1894 | 265 | 2 | 306 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2920 | 98.7455 | 99.8446 | 31.3666 | 3857 | 49 | 3856 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2697 | 98.7490 | 99.7960 | 33.5412 | 2447 | 31 | 2446 | 5 | 0 | 0.0000 | |