PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38251-38300 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5664 | 99.3506 | 99.7831 | 28.4161 | 459 | 3 | 460 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9248 | 99.8496 | 100.0000 | 41.9185 | 1328 | 2 | 1326 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.5652 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.4407 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7823 | 99.7440 | 99.8206 | 33.3561 | 3896 | 10 | 3895 | 7 | 3 | 42.8571 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8184 | 99.8386 | 99.7982 | 36.6402 | 2474 | 4 | 2473 | 5 | 1 | 20.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7545 | 99.6496 | 99.8596 | 26.6735 | 1422 | 5 | 1422 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.7872 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 84.1584 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0897 | 98.4762 | 99.7110 | 62.4593 | 1034 | 16 | 1035 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3671 | 100.0000 | 98.7421 | 70.8257 | 157 | 0 | 157 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 82.3529 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5945 | 99.3642 | 99.8259 | 36.7938 | 1719 | 11 | 1720 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7151 | 99.5733 | 99.8573 | 47.3724 | 700 | 3 | 700 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.5915 | 577 | 7 | 578 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6618 | 99.7743 | 99.5495 | 35.0877 | 442 | 1 | 442 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7892 | 99.7825 | 99.7959 | 36.4791 | 7339 | 16 | 7335 | 15 | 5 | 33.3333 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8159 | 99.9133 | 99.7187 | 39.4602 | 4612 | 4 | 4608 | 13 | 3 | 23.0769 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7622 | 99.5982 | 99.9267 | 30.6657 | 2727 | 11 | 2727 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.2986 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8250 | 99.7812 | 99.8688 | 48.0455 | 2280 | 5 | 2283 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 27.8740 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 41.6411 | 1330 | 0 | 1330 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6807 | 99.5745 | 99.7872 | 69.5003 | 468 | 2 | 469 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.7124 | 95.5272 | 100.0000 | 30.1402 | 299 | 14 | 299 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 66.2060 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5192 | 99.0431 | 100.0000 | 47.9899 | 414 | 4 | 414 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 23.6246 | 235 | 2 | 236 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.2424 | 59 | 0 | 59 | 0 | 0 | ||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.7390 | 98.1567 | 91.5513 | 36.9925 | 3834 | 72 | 3836 | 354 | 36 | 10.1695 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.1110 | 97.3366 | 89.2370 | 37.3586 | 2412 | 66 | 2421 | 292 | 5 | 1.7123 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6881 | 99.6496 | 95.8023 | 36.3088 | 1422 | 5 | 1415 | 62 | 31 | 50.0000 | |